Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	900,246	C→T	S66L (TCA→TTA)	SAUSA300_RS04420 →	cysteine desulfurase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	900,246	0	C	T	100.0%	283.1 / NA	95	S66L (TCA→TTA)	SAUSA300_RS04420	cysteine desulfurase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (90/5);  total (90/5)

CGACAAGTCAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATCATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTACACGCGGAACAACTGC  >  NC_007793/900150‑900345                                                                                                 |                                                                                                    cGACAAGTCAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGattatt                                                                                                  >  1:4954580/1‑100 (MQ=255)  gACAAGTCAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTg                                                                                                 >  1:2844058/1‑100 (MQ=255)     aaGTCAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCa                                                                                              <  1:2853339/100‑1 (MQ=255)     aaGTCAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCa                                                                                              <  1:2419160/100‑1 (MQ=255)       gTCAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAAc                                                                                            <  1:3114862/100‑1 (MQ=255)       gTCAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAAc                                                                                            >  1:2799152/1‑100 (MQ=255)         cAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTg                                                                                          >  1:3989875/1‑100 (MQ=255)         cAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTg                                                                                          >  1:5012832/1‑100 (MQ=255)         cAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGACAACTg                                                                                          >  1:4306342/1‑100 (MQ=255)          taaCGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGTGTTATAATTCAAACGTTCATCGTGGTGTCCATACATTAGGATTATTGGCAACTGa                                                                                         >  1:565266/2‑100 (MQ=255)            aggCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATg                                                                                       >  1:2702601/3‑100 (MQ=255)            aCGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATg                                                                                       >  1:3362232/1‑100 (MQ=255)            aCGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATg                                                                                       >  1:2620494/1‑100 (MQ=255)             tgCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATgg                                                                                      >  1:1709964/2‑100 (MQ=255)               ccTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACATGCGTTATAATTCAAACGTTCATCGTGGTGTTAATACATTAGGATTATTGGCAACTGATGGtt                                                                                    >  1:4351774/1‑100 (MQ=255)               ccTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGtt                                                                                    >  1:648877/1‑100 (MQ=255)               ccTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGtt                                                                                    >  1:20639/1‑100 (MQ=255)               ccTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGtt                                                                                    >  1:5704740/1‑100 (MQ=255)                cTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTa                                                                                   >  1:1832055/1‑100 (MQ=255)                cTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTa                                                                                   >  1:772581/1‑100 (MQ=255)                cTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACAGAtcggaa                                                                                   >  1:1817578/1‑95 (MQ=255)                 tgtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTAt                                                                                  >  1:4614789/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACtagatcggaag                                                                                 >  1:4795161/1‑90 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGacgagatcg                                                                                 >  1:1473598/1‑92 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:1921288/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:5539784/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:2849508/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:2840364/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:4719025/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:4615267/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:335287/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:3828668/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:2660116/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:4544586/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:430976/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:3519734/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:3168124/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATg                                                                                 >  1:3685521/1‑100 (MQ=255)                  gtgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGAGTTCATACATTAGAATTATTGGCAACTGATGGTTATg                                                                                 >  1:2660564/1‑100 (MQ=255)                  gggCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAAGATTATTGGCAACTGATGGTTATg                                                                                 >  1:2663655/3‑100 (MQ=255)                   cgCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGGGTTCATACATTAGGATTATTGGCAACTGATGGTTATGa                                                                                >  1:396811/2‑100 (MQ=255)                    gCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGGTTATTGGCAACTGATGGTTATGaa                                                                               >  1:3589860/1‑100 (MQ=255)                    gCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGaa                                                                               >  1:5735031/1‑100 (MQ=255)                    gCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGaa                                                                               >  1:937195/1‑100 (MQ=255)                    gCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGaa                                                                               >  1:969797/1‑100 (MQ=255)                      aaGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGaaaa                                                                             >  1:5750836/1‑100 (MQ=255)                          gtTAAATGTTTTAGAAGATTACTACAAGCGTCATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGcc                                                                         >  1:4473023/1‑100 (MQ=255)                             aaaTGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGCGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGt                                                                      >  1:610713/1‑100 (MQ=255)                                      agaagaTTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGtt                                                             >  1:131775/1‑100 (MQ=255)                                            ttACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTcgtcgt                                                       >  1:791576/1‑100 (MQ=255)                                              actacAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGttt                                                     >  1:907926/1‑100 (MQ=255)                                              actacAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGttg                                                     <  1:2318194/100‑2 (MQ=255)                                                tacAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTtta                                                   >  1:1546974/1‑100 (MQ=255)                                                tacAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTtta                                                   >  1:388762/1‑100 (MQ=255)                                                 acAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTttat                                                  >  1:5468034/1‑100 (MQ=255)                                                 acAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTttat                                                  >  1:420247/1‑100 (MQ=255)                                                 acAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTttat                                                  >  1:4607127/1‑100 (MQ=255)                                                 acAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTttat                                                  >  1:394879/1‑100 (MQ=255)                                                 acAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTttat                                                  >  1:1288798/1‑100 (MQ=255)                                                 acAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTttat                                                  >  1:1367927/1‑100 (MQ=255)                                                 acAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTttat                                                  >  1:3055017/1‑100 (MQ=255)                                                 acAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGCTATGAAAATGCCCGTGAAACCGTTCGTCGTTttat                                                  >  1:1544770/1‑100 (MQ=255)                                                 acAAGCGTTATAATTCAAACGTTCATCGTGGTGCTCATACATTAGGATTATTTGCAACTGATGGTTATGAAAATGCCCGTGAAACTGGTCGTCGTTttat                                                  >  1:219543/1‑100 (MQ=255)                                                 acAAGCGTTATAATTCAAACGTTCATCGTGGGGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTttat                                                  >  1:1431866/1‑100 (MQ=255)                                                         tataATTCAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGa                                          <  1:5339422/100‑1 (MQ=255)                                                                cAAACGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAACGCGAAgatcgg                                   >  1:4239822/1‑95 (MQ=255)                                                                   aggTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTga                                >  1:4070478/3‑100 (MQ=255)                                                                    cGTTCATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAgatcggaaga                               >  1:3525185/1‑91 (MQ=255)                                                                        cATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGaaa                           >  1:152953/1‑100 (MQ=255)                                                                        cATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGaaa                           >  1:1393647/1‑100 (MQ=255)                                                                        cATCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGaaa                           >  1:3074553/1‑100 (MQ=255)                                                                          tCGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATc                         >  1:2132079/1‑100 (MQ=255)                                                                           ggtggtgTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCa                        >  1:5586975/2‑100 (MQ=255)                                                                           cGTGGTGTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCa                        >  1:2193742/1‑100 (MQ=255)                                                                            gtggtgTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCAt                       >  1:1472357/1‑100 (MQ=255)                                                                            gcggtgTTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCAt                       >  1:2671546/3‑100 (MQ=255)                                                                              ggtgTTCATACATTAGGATTATTGGTAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGATGTACTTTGATGAAATCAttt                     >  1:51892/1‑100 (MQ=255)                                                                               tgcttCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCAtttt                    >  1:588838/4‑100 (MQ=255)                                                                                 gtTCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTa                  >  1:1021164/1‑100 (MQ=255)                                                                                  gtCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTac                 >  1:3055378/2‑100 (MQ=255)                                                                                   tCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTaca                >  1:5156183/1‑100 (MQ=255)                                                                                   tCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTaca                >  1:5533420/1‑100 (MQ=255)                                                                                   tCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTaca                >  1:3982386/1‑100 (MQ=255)                                                                                   tCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTaca                >  1:2200727/1‑100 (MQ=255)                                                                                   tCATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTaca                >  1:2266061/1‑100 (MQ=255)                                                                                   ccATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTaca                >  1:2957693/2‑100 (MQ=255)                                                                                   ccATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGCCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTaca                >  1:5110112/2‑100 (MQ=255)                                                                                    gaTACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTacac               >  1:1043860/2‑100 (MQ=255)                                                                                    cATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTacac               >  1:5553080/1‑100 (MQ=255)                                                                                    cATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTacac               >  1:3373303/1‑100 (MQ=255)                                                                                    cATACATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTacac               >  1:1307689/1‑100 (MQ=255)                                                                                      cccATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTACAcgc             >  1:1916675/3‑100 (MQ=255)                                                                                       aCATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTACAcgcg            >  1:4289985/1‑100 (MQ=255)                                                                                       aCATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTACAcgcg            >  1:240614/1‑100 (MQ=255)                                                                                        cATTAGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTACACGCgg           >  1:3799961/1‑100 (MQ=255)                                                                                            aGGATTATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTACACGCGGagat       >  1:1774555/1‑97 (MQ=255)                                                                                                 cATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTACACGCGGAACAACTGc  >  1:3177365/1‑100 (MQ=255)                                                                                                 |                                                                                                    CGACAAGTCAAACGCCTGTGCAAGTGTTAAATGTTTTAGAAGATTACTACAAGCGTTATAATTCAAACGTTCATCGTGGTGTTCATACATTAGGATCATTGGCAACTGATGGTTATGAAAATGCCCGTGAAACCGTTCGTCGTTTTATTAATGCGAAGTATTTTGAAGAAATCATTTTTACACGCGGAACAACTGC  >  NC_007793/900150‑900345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑