| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 495,541 | C→T | A226T (GCA→ACA) | SAUSA300_RS02370 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 495,541 | 0 | C | T | 95.0% | 50.4 / ‑3.6 | 20 | A226T (GCA→ACA) | SAUSA300_RS02370 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (1/18); minor base G (0/1); total (1/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.14e-01 | |||||||||||
GCGCCAAGTGAACCTATTAACACTGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGCCATATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTGGCTATGGTAATGAGTGTACGCATATGCCAGCCTGTAAC > NC_007793/495444‑495637 | gcgcCAAGTGAACCTATTAACACTGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGcat < 1:903470/100‑3 (MQ=255) cgcCAAGTGAACCTATTAACATTGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCat < 1:900063/100‑1 (MQ=255) cgcCAAGTGAACCTATTAACACTGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCat < 1:1364485/100‑1 (MQ=255) cgcCAAGTGAACCTATTAACACTGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCat < 1:129311/100‑1 (MQ=255) cgcCAAGTGAACCTATTAACACTGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCac < 1:344506/100‑2 (MQ=255) cgcCAAGTGAACCTATTAACAATGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCat < 1:141020/100‑1 (MQ=255) gcCAAGTGAACCTATTAACACTGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCata < 1:5543725/100‑1 (MQ=255) cAAGTGAACCTATTAACACTGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGGCacaca < 1:1737247/100‑5 (MQ=255) aaGTGAACCTATTAACACTGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCatatat < 1:35063/100‑1 (MQ=255) ccTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCATATATATGATTAATTCTGTTAAACCta > 1:3671808/2‑100 (MQ=255) cTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCATATATATGATTAATTCTGTTAAACCtag < 1:5078333/100‑2 (MQ=255) aTAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCATATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACt < 1:752691/100‑1 (MQ=255) aaaaaGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCATATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTgg < 1:1500094/100‑1 (MQ=255) aGTTCATCGTTTCATATTTAATGCCTTTACCATCTGTCATATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTGGCTAt < 1:5427617/100‑1 (MQ=255) ttCATATTTAATGCCTTTACCATCTGTCATATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTGGCTATGGTAATGAgg < 1:2146971/100‑2 (MQ=255) tgctcttccgaTCTGTCATATATATGATTAATGCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTGGCTATGGTAATGAGTGTACGCATATg < 1:5169485/90‑1 (MQ=255) gtgcTTTCCGATCTGTCATATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTGGCTATGGTAATGAGTGTACGCATATg < 1:5176990/97‑1 (MQ=255) ctcttccgaTCTGTTATATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTGGCTATGGTAATGAGTGTACGCATATGcc < 1:1427141/92‑1 (MQ=255) aTCTGTCCTATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTGGCTATGGTAATGAGTGTACGCATATGCCAGCCTGTa < 1:1958098/100‑1 (MQ=255) aTCTGTCATATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTGGCTATGGTAATGAGTGTACGCATATGCCAGCCTGTa < 1:2235246/100‑1 (MQ=255) cTGTCATATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTGGCTATGGTAATGAGTGTACGCATATGCCAGCCTGTAAc < 1:5624611/100‑1 (MQ=255) | GCGCCAAGTGAACCTATTAACACTGAGGCTAGGAAGATATCTTTCGGTGGTAATGATAAAAAGTTCATCGTTTCATATTTAATGCCTTTACCATCTGCCATATATATGATTAATTCTGTTAAACCTATACTCAAAAAAGTTCCGATAATTGTACTGGCTATGGTAATGAGTGTACGCATATGCCAGCCTGTAAC > NC_007793/495444‑495637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |