| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 414,724 | C→T | intergenic (‑361/‑303) | SAUSA300_RS01910 ← / → SAUSA300_RS01915 | cystathionine gamma‑synthase/chromosome partitioning protein ParB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 414,724 | 0 | C | T | 97.2% | 92.5 / ‑4.7 | 36 | intergenic (‑361/‑303) | SAUSA300_RS01910/SAUSA300_RS01915 | cystathionine gamma‑synthase/chromosome partitioning protein ParB |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (0/35); total (0/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
TTAATACTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTCAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGTTTACGTTTCATTAAACTGTTATA > NC_007793/414640‑414817 | ttAATACTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCGACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCat < 1:4841064/100‑2 (MQ=255)tgaaTACTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAg < 1:4162463/98‑1 (MQ=255) aaTACTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGct < 1:2065713/100‑1 (MQ=255) tACTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGctgg < 1:5408262/100‑3 (MQ=255) tACTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGctag < 1:4483129/100‑2 (MQ=255) aCTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGctact < 1:1130539/100‑1 (MQ=255) cTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGctacta < 1:2284247/100‑1 (MQ=255) cTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGctacta < 1:195960/100‑1 (MQ=255) cTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGctacta < 1:5407516/100‑1 (MQ=255) cTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGctacta < 1:5491032/100‑1 (MQ=255) cTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGctacat < 1:4500884/100‑3 (MQ=255) tGTATCGCTATAACGGGCGACCCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACCCGCTTTTAAAATCTTCTCTCAGCTACTaa < 1:5393106/100‑1 (MQ=255) tGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTaa < 1:2535503/100‑1 (MQ=255) tGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTaa < 1:2912283/100‑1 (MQ=255) tGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTaa < 1:1075559/100‑1 (MQ=255) tATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTaagt < 1:3138665/100‑3 (MQ=255) aaCGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCCTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGt < 1:3615747/100‑1 (MQ=255) gggCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGtata < 1:473347/100‑1 (MQ=255) gggCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGtata < 1:5742850/100‑1 (MQ=255) cGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGc < 1:1064861/100‑1 (MQ=255) ccGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGgt < 1:5764766/100‑1 (MQ=255) aGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTCCTAAAGACTCTCTGTATAAGCAGGgtgtgg < 1:209019/100‑2 (MQ=255) ttccgatctggCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATtgtg < 1:1127645/91‑1 (MQ=255) tccgatctaGGCCATTTTCAAACCCGCTTTTAAAATCTTCTCTCAGCTTCTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATtgtg < 1:1770507/92‑1 (MQ=255) acacTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATtgtg < 1:5145408/100‑1 (MQ=255) gatctaaGGTCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGtt < 1:4911086/95‑1 (MQ=255) acTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATtgtggt < 1:4689298/100‑3 (MQ=255) acTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTgtgtg < 1:2582442/100‑2 (MQ=255) cTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGttt < 1:3593336/100‑1 (MQ=255) cTCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGttt < 1:504905/100‑1 (MQ=255) tCCAAGGCCATTTTCAAACACGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGTCTa < 1:5260944/100‑1 (MQ=255) acGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGTTTACGTTTCATTAAACTGtgtg < 1:1508902/100‑4 (MQ=255) cGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGTTTACGTTTCATTAAACTGTtata < 1:2580782/100‑1 (MQ=255) cGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGTTTACGTTTCATTAAACTGTtata < 1:4906223/100‑1 (MQ=255) cGCTTTTAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGTTTACGTTTCATTAAACTGTtata < 1:1041549/100‑1 (MQ=255) cGCTTTCAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGTTTACGTTTCATTAAACTGTtata < 1:4823905/100‑1 (MQ=255) | TTAATACTGTATCGCTATAACGGGCGAACCCGTAGACACCTCATATTGGCATCAACACTCCAAGGCCATTTTCAAACACGCTTTCAAAATCTTCTCTCAGCTACTAAAGACTCTCTGTATAAGCAGGGTGTGTTTTACTTTCCTCTTTATTGTGTTTACGTTTCATTAAACTGTTATA > NC_007793/414640‑414817 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |