Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	195,412	C→A	intergenic (‑117/‑62)	SAUSA300_RS00905 ← / → SAUSA300_RS00910	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	195,412	0	C	A	100.0%	13.3 / NA	7	intergenic (‑117/‑62)	SAUSA300_RS00905/SAUSA300_RS00910	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (4/3);  total (4/3)

CTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATC  >  NC_007793/195335‑195504                                                                              |                                                                                             cTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCATTGTAATCCGATAAGAATtata                                                                        >  1:1838096/1‑100 (MQ=255)      aTGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCATTGTAATCCGATAAGAATTATAGTAat                                                                   >  1:4124397/1‑100 (MQ=255)                          aaaTATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCATTGTAATCCGATAAGAATTATAGTAATATTTTTTCAGCCATTGTtat                                               <  1:5093885/100‑1 (MQ=255)                           aaTATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCATTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTtata                                              <  1:1959013/100‑1 (MQ=255)                             tatatTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCATTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATagg                                            <  1:223975/100‑1 (MQ=255)                                                                       tAATATCATTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACagat  >  1:4941611/1‑97 (MQ=255)                                                                       tAATATCATTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATc  >  1:76587/1‑100 (MQ=255)                                                                              |                                                                                             CTAACATGATTTTTATACTCTTTGAAAATATATTTTACAGAATTTTATCTAAATATTTAAAAAAATATCTTAATATCCTTGTAATCCGATAAGAATTATAGTAATATTTTTTCAACCATTGTTATAGGAGGTCTTATTAATGACATTATTTTTATTAGAAGCTAACAATC  >  NC_007793/195335‑195504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑