| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 99,032 | G→C | R22T (AGA→ACA) | SAUSA300_RS00470 → | transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 99,032 | 0 | G | C | 90.5% | 40.6 / ‑2.1 | 22 | R22T (AGA→ACA) | SAUSA300_RS00470 | transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (1/0); major base C (18/1); minor base T (2/0); total (21/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.97e-01 | |||||||||||
ATTAAACATAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGAGAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTGGTTATAGGTGGTTTGTATGATAATAGATTATTGGTCAAGGCGA > NC_007793/98938‑99118 | aTTAAACATAAAACTGAAGGAGCTATTACAACGGGGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGAcaagaa < 1:3524809/100‑1 (MQ=255) aaaCATAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGATaagaaaga > 1:5027671/1‑100 (MQ=255) aaaCATAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACaagaaaga > 1:2933661/1‑100 (MQ=255) aaaCATAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACaaaaaaga > 1:5119990/1‑100 (MQ=255) aaCATAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGATAAGAAAgat > 1:3489547/1‑100 (MQ=255) aaaaCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACaagaaagagatcgg > 1:1426872/1‑94 (MQ=255) aaaaCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAgatcggaa > 1:4113942/1‑95 (MQ=255) aaaaCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATgg > 1:2306981/1‑100 (MQ=255) aaaaCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGACgg > 1:1224915/1‑100 (MQ=255) aaaCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATggg > 1:5091906/1‑100 (MQ=255) aCTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGAGAAGAAAgatcggaagag > 1:5346156/1‑92 (MQ=255) gAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGgagatc > 1:5375945/1‑98 (MQ=255) aaGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATAATGGgagatcg > 1:3684982/1‑97 (MQ=255) tgtggCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGgagatcgg > 1:3402517/5‑96 (MQ=255) gCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGgagatcggaaga > 1:1968057/1‑92 (MQ=255) gCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATAtatta > 1:2214071/1‑100 (MQ=255) gCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGAAGATCGgaagagcacacg > 1:1912379/1‑90 (MQ=255) ggCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTatgat > 1:888919/1‑100 (MQ=255) aagaaagaTGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGtag > 1:818031/1‑98 (MQ=255) aagaaagaTGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTgg > 1:3003243/1‑100 (MQ=255) tACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTGGTTATAggtgg < 1:4957707/100‑1 (MQ=255) cAAACGCGGTTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTGGTTATAGGTGGTTTGTATGATAATAGATTATTGGTCAAGGc > 1:2548031/1‑100 (MQ=255) aaCGCGGCTAAGACAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTGGTTCTAGGTGGTTTGTATGATAATAGATTATCGGTCAAgatcg > 1:4595121/1‑96 (MQ=255) | ATTAAACATAAAACTGAAGGAGCGATTACAATGGCGACTAAGAAAGATGTACATGATTTATTTTTAAATCATGTGAATTCAAACGCGGTTAAGAGAAGAAAGATGATGGGAGAATATATTATTTATTATGATGGCGTGGTTATAGGTGGTTTGTATGATAATAGATTATTGGTCAAGGCGA > NC_007793/98938‑99118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |