Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	75,136	C→A	intergenic (‑73/‑429)	SAUSA300_RS00335 ← / → SAUSA300_RS00340	ArgR family transcriptional regulator/universal stress protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	75,136	0	C	A	100.0%	20.6 / NA	9	intergenic (‑73/‑429)	SAUSA300_RS00335/SAUSA300_RS00340	ArgR family transcriptional regulator/universal stress protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (3/6);  total (3/6)

TTCATTTTTATTACCCCCTTTATTATTTTTGATTATGAAATAGATTTTAAATAACTGTATAAAAATCACTTATAAATCTCAATTTACAAATAATTTTGAAATAGTGGATGCTTTAATTATAAGTAGATTATTTTATGCCTAAAAGG  >  NC_007793/75059‑75204                                                                              |                                                                     ttCATTTTTATTAACCCCTTTATTATTTTTGATTATGAAATAGATTTTAAATAACTGTATAAAAATCACTTATAAATATCAATTTACAAATAATTTTGaa                                                >  1:4576621/1‑100 (MQ=255)        gatctggccccTTTATTATTTTTGATTATGAAATAGATTTTAAATAACTGTATAAAAATCACTTATAAATATCAATTTACAAATAATTTTGAAATAGTgg                                         <  1:4105622/93‑1 (MQ=255)             caccccTTTATTATTTTTTTTTCTGAAATGGATTTTCCCTAACTGTATACCCATCACTTCTAAATATAAATTAACCAATAATTTTGAAATAGTGGATgtt                                    >  1:1440989/3‑98 (MQ=255)              accccTTTATTATTTTTGATTATGAAATAGATTTTAAATAACTGTATAAAAATCACTTATAAATATCAATTTACAAATAATTTTGAAATAGTGGATGCtt                                   >  1:1719821/2‑100 (MQ=255)                         attTTTGATTATGAAATAGATTTTAAATAACTGTATAAAAATCACTTATAAATATCAATTTACAAATAATTTTGAAATAGTGGATGCTTTAATTATAAGt                        <  1:1979985/100‑1 (MQ=255)                                               ttAAATAACTGTATAAAAATCACTTATAAATATCAATTTACAAATAATTTTGAAATAGTGGATGCTTTAATTATAAGTAGATTATTTTACGCTTAAAAgg  <  1:1040958/100‑1 (MQ=255)                                               ttAAATAACTGTATAAAAATCACTTATAAATATCAATTTACAAATAATTTTGAAATAGTGGATGCTTTAATTATAAGTAGATTATTTTACGCTTAAAAgg  <  1:1994450/100‑1 (MQ=255)                                               ttAAATAACTGTATAAAAATCACTTATAAATATCAATTTACAAATAATTTTGAAATAGTGGATGCTTTAATTATAAGTAGATTATTTTACGCTTAAAAgg  <  1:3259115/100‑1 (MQ=255)                                               ttAAATAACTGTATAAAAATCACTTATAAATATCAATTTACAAATAATTTTGAAATAGTGGATGCTTTAATTATAAGTAGATTATTTTACGCTTAAAAgg  <  1:5322484/100‑1 (MQ=255)                                                                              |                                                                     TTCATTTTTATTACCCCCTTTATTATTTTTGATTATGAAATAGATTTTAAATAACTGTATAAAAATCACTTATAAATCTCAATTTACAAATAATTTTGAAATAGTGGATGCTTTAATTATAAGTAGATTATTTTATGCCTAAAAGG  >  NC_007793/75059‑75204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑