| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 62,522 | G→A | P23S (CCA→TCA) | SAUSA300_RS00270 ← | transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 62,522 | 0 | G | A | 100.0% | 37.3 / NA | 14 | P23S (CCA→TCA) | SAUSA300_RS00270 | transposase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (5/9); total (5/9) | |||||||||||
TAACTTTCCCCATTTCGATACCATCGCCACCAATTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTGTTGGAAATCCTGCTGCTTTCATTTCAACTGCTTTATACTTTGTTTCTACTGAATAAGAAGCTCTTTTCATAGAAAAAAACACCTCCGTATGATTCATT > NC_007793/62434‑62616 | ccgatctCCCCACTTCGATACCATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCctgctg < 1:5706808/94‑1 (MQ=255) tcTTTCCCCATTTCGATACCATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTgctgct < 1:3382139/99‑1 (MQ=255) tcTTTCCCCATTTCGATACCATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTgctgct < 1:5686312/99‑1 (MQ=255) gatctCCCCATTTCGATACCATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTgctgct < 1:4383812/96‑1 (MQ=255) cTTTCCCCATTTCGATACCATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTgctgcta < 1:745130/100‑2 (MQ=255) cTTTCCCCATTTCGATAACATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTgctgctg < 1:4560042/100‑2 (MQ=255) tttCCCCATTTCGATACCATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTGCTGCttt < 1:4151114/100‑1 (MQ=255) ttCCCCATTTCGATACCATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTGCTGCtttc > 1:5443018/1‑100 (MQ=255) ttCCCCATTTCGATACCATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCCTTTTTTGAAAATCCTGCTGCtttc > 1:5527977/1‑100 (MQ=255) tCCCCATTTCGATACCATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTGCTGCtttca > 1:3053264/1‑100 (MQ=255) gATACCATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTGCTGCTTTCATTTCAACTgg < 1:1366119/100‑2 (MQ=255) cATCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTGCTGCTTTCATTTCAACTGCTTtag < 1:1819990/100‑2 (MQ=255) aTCGCCACCAAGTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTTTTGAAAATCCTGCTGCTTTCATTTCAACTGCTTtata > 1:2678912/1‑100 (MQ=255) ttttgAAAATCCTGCTGCTTTCATTTCAACTGCTTTATACTTTGTTTCTACTGAATAAGAAACTCTTTTCATAGAAAAAAACACCTCCGTATGATTCAtt > 1:4436596/3‑100 (MQ=255) | TAACTTTCCCCATTTCGATACCATCGCCACCAATTTTTCACTTGTGTTCTATTTCTAATATTTAATTCTTTCATAATTTCTTTTGTTGGAAATCCTGCTGCTTTCATTTCAACTGCTTTATACTTTGTTTCTACTGAATAAGAAGCTCTTTTCATAGAAAAAAACACCTCCGTATGATTCATT > NC_007793/62434‑62616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |