| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,841,262 | G→T | A234D (GCT→GAT) | SAUSA300_RS14530 ← | polysaccharide deacetylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,841,262 | 0 | G | T | 91.9% | 98.1 / 1.3 | 38 | A234D (GCT→GAT) | SAUSA300_RS14530 | polysaccharide deacetylase |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base T (11/23); total (13/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.47e-01 | |||||||||||
TACCTTCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCAGCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCATAACCGGTTAAAGCAACAACACCTTTTTC > NC_007793/2841167‑2841359 | tACCTTCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTgg < 1:441821/100‑2 (MQ=255)tACCTTCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGc < 1:4367620/100‑1 (MQ=255) aCCTTCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCAGCTGca < 1:4141913/100‑2 (MQ=255) cTTCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCtt < 1:1222824/100‑1 (MQ=255) cTTCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCtt < 1:4559391/100‑1 (MQ=255) cTTCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCtt < 1:5334993/100‑1 (MQ=255) cTTCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCtc < 1:250825/100‑2 (MQ=255) ttCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCttt < 1:4519590/100‑1 (MQ=255) ttCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCtac < 1:1722720/100‑3 (MQ=255) tCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCtttg < 1:1368350/100‑2 (MQ=255) tCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCtttg < 1:2350531/100‑2 (MQ=255) gTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTg < 1:5745216/100‑1 (MQ=255) tttttCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGta < 1:1993929/100‑1 (MQ=255) ttttCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGtat < 1:5399156/100‑1 (MQ=255) tCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCCTTCCGCGAACAACTTCCTCCTCTGCCTTTTTATCCTTTGTATAAt > 1:1676569/1‑100 (MQ=255) tgaatgaCTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAattcagca < 1:3621216/100‑4 (MQ=255) cTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGag < 1:3689612/100‑2 (MQ=255) cTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGAt < 1:2643187/100‑1 (MQ=255) gACCATCCTTCCCGTTTCATTGCGCGAACATCTTCCTCAGCTGCCTTTTTATTCTTTGTATATTCTTTACTCGTTAATTCATTCGTGCGATAACCTAATa > 1:1614886/1‑100 (MQ=255) gACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATa > 1:4019315/1‑100 (MQ=255) tccatccatCCCGTTTCATTGCGCGAACAACTTCCTCAGCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATAc > 1:3331640/2‑100 (MQ=255) gccatccatCCCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATAc > 1:1161703/2‑100 (MQ=255) catccCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACgaactc > 1:4089829/1‑95 (MQ=255) atccCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCa > 1:3725768/1‑100 (MQ=255) atccCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCa > 1:5425597/1‑100 (MQ=255) atccCGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCa > 1:5004734/1‑100 (MQ=255) ccGTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTACTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCATaa > 1:598722/1‑100 (MQ=255) cGTTTCATTGCGCGAACAACTTCCTCATATGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCCCagatc > 1:3195542/1‑96 (MQ=255) gTTTCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCATAAcc < 1:3762702/100‑1 (MQ=255) ttCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCATAAccca < 1:935483/100‑3 (MQ=255) tCATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCATAACCGGt > 1:62823/1‑100 (MQ=255) cATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCATAACCGGtt < 1:2505775/100‑1 (MQ=255) cATTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCCCATagatcgga > 1:626058/1‑93 (MQ=255) aTTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCATAACCGGTTa < 1:4232798/100‑1 (MQ=255) aTTGCGCGAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCATAACCGGTTa < 1:3114265/100‑1 (MQ=255) gAACAACTTCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCATAACCGGTTagacatca < 1:1512504/100‑8 (MQ=255) tCCTCATCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAACTCATTCGTGCGATAACCTAATACGCCCTCATAACCGGTTAAAGCAACAACACCtc < 1:3743795/100‑2 (MQ=255) tCACCTGCCTTTTTATTCTTTGTATAATCTTTACGCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCAT‑ACCGGTTAAAGCAACAACACCTTTTTc < 1:1880276/100‑1 (MQ=255) | TACCTTCTAAAGATGTTTTTTCAAAATTAATGTGACCATATGAATGACTCGCAAATGACCATCCATCCCGTTTCATTGCGCGAACAACTTCCTCAGCTGCCTTTTTATTCTTTGTATAATCTTTACTCGTTAATTCATTCGTGCGATAACCTAATACGCCCTCATAACCGGTTAAAGCAACAACACCTTTTTC > NC_007793/2841167‑2841359 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |