| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,740,597 | G→A | G412S (GGT→AGT) | SAUSA300_RS14085 → | amino acid permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,740,597 | 0 | G | A | 100.0% | 43.5 / NA | 17 | G412S (GGT→AGT) | SAUSA300_RS14085 | amino acid permease |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (15/2); total (15/2) | |||||||||||
ATTCGCATTTTTAGCACAATTAATTTCAGCAGGTACACTTGTTGCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAGGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTGTGTTACCAGCAATTACATTTGTTTTAGTATTGCTAGTATTCTGGGGATT > NC_007793/2740506‑2740691 | aTTCGCATTTTTAGCACAATTAATTTCAGCAGGTACACTTGTTGCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAGAGTAAAGAt > 1:3982697/1‑100 (MQ=255) ctAGCACAATTAATTTCAGCAGGTACACTTGTTGCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTc > 1:4733014/2‑100 (MQ=255) acacaATTAATTTCAGCAGGTACACTTGTTGCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTg > 1:4101805/2‑100 (MQ=255) tCAGCAGGTACACTTGTTGCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTAc > 1:811737/1‑100 (MQ=255) cagcagGTACACTTGTTGCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTAcc > 1:1624833/1‑100 (MQ=255) tgcagGTACACTTGTTGCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCt > 1:1714618/2‑100 (MQ=255) cagGTACACTTGTTGCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCttt < 1:3762270/100‑1 (MQ=255) tgttgCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCtgtg > 1:333145/1‑100 (MQ=255) catgCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTgtgt > 1:3233125/3‑100 (MQ=255) gCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTGTGTTAc > 1:5194811/1‑100 (MQ=255) ttATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTGTGTTACCAGc < 1:3440492/100‑1 (MQ=255) aTGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTGTGTTACCAGCaa > 1:386634/1‑100 (MQ=255) aGCAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTGTGTTACCAGCAATTACATTTGTTTTa > 1:2027654/1‑100 (MQ=255) aGCAATGTATCGTTTAAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTGTGTTACCAGCAATTACATTTGTTTTa > 1:606125/1‑100 (MQ=255) cAATGTATCGTTTGAGAAAGCGTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTGTGTTACCAGCAATTACATTTGTTTTAGt > 1:5149906/1‑100 (MQ=255) tATCGTTTGAGAAAGCGTGAAAGGAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTGTGTTACCAGCAATTACATTTGTTTTAGTATTGc > 1:4104888/1‑100 (MQ=255) gTGAAAGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTGTGTTACCAGCAATTACATTTGTTTTAGTATTGCTAGTATTCTGGGGAtc > 1:2213670/1‑99 (MQ=255) | ATTCGCATTTTTAGCACAATTAATTTCAGCAGGTACACTTGTTGCATTTATGTTCGTTTCATTAGCAATGTATCGTTTGAGAAAGCGTGAAGGTAAAGATCTACCAATTCCTGCATTTAAATTACCTTTATATCCTGTGTTACCAGCAATTACATTTGTTTTAGTATTGCTAGTATTCTGGGGATT > NC_007793/2740506‑2740691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |