Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007793	1044088	1044127	40	1 [0]	[0] 1	SAUSA300_RS05130	hypothetical protein

CAACGACGCATATCGTTGTAACACGACAATAGCAAACACATAATTTAGTGTCGTTGTGCACACAACAAAAATTGAATCATGAATTACAAGCAAAAGTAGC  >  NC_007793/1043992‑1044091                                                                                                |     cAACGACGCATATCGTTGTAACACGACAATAGCAAACACATAATTTAGTGTCGTTGTGCACACAACAAAAATTGAATCATGAATTACAGGCAAAAgatcg  >  1:5253458/1‑96 (MQ=255)                                                                                                |     CAACGACGCATATCGTTGTAACACGACAATAGCAAACACATAATTTAGTGTCGTTGTGCACACAACAAAAATTGAATCATGAATTACAAGCAAAAGTAGC  >  NC_007793/1043992‑1044091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑