| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,605,260 | (A)6→7 | intergenic (‑204/+248) | SAUSA300_RS13385 ← / ← SAUSA300_RS13390 | alkylhydroperoxidase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,605,254 | 1 | . | A | 94.1% | 44.1 / ‑3.2 | 17 | intergenic (‑198/+254) | SAUSA300_RS13385/SAUSA300_RS13390 | alkylhydroperoxidase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (4/12); total (5/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.91e-01 | |||||||||||
AAAACATTTAGCACTTATATTTAAAAAATATATAAAATATGAAAACAGATTGAAAGGATATTATACCTTGCTCTACCCTTTTTTAT‑AAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGATATATATTGTTCTTATAATGGCCAAA > NC_007793/2605169‑2605348 | aaaaCATTTAGCACTTATATTTAAAAAATATATAAAATATGAAAACAGATTGAAAGGATATTATACCTTGCTCTACCCTTTTTTATAAAAAAATcacaca < 1:4837542/100‑1 (MQ=255) aaaCATTTAGCACTTATATTTAAAAAATATATAAAATATGAAAACAGATTGAAAGGATATTATACCTTGCTCTACCCTTTTTTATAAAAAAATcacacac < 1:2229769/100‑1 (MQ=255) aaaCATTTAGCACTTATATTTAAAAAATATATAAAATATGAAAACAGATTGAAAGGATATTATACCTTGCTCTACCCTTTTTTATAAAAAAATcacacac < 1:2868882/100‑1 (MQ=255) tttAGCACTTATATTTAAAAAATATATAAAATATGAAAACAGATTGAAAGGATATTATACCTTGCTCTACCCTTTTTTATAAAAAAATCACACACATTTg < 1:2453348/100‑1 (MQ=255) ttAGCACTTATATTTAAAAAATATATAAAATATGAAAACAGATTGAAAGGATATTATACCTTGCTCTACCCTTTTTTAT‑AAAAAATCACACACATTTgag > 1:348831/1‑100 (MQ=255) tatataAAATATGAAAACAGATTGAAAGGATATTATACCTTGCTCTACCCTTTTTTATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATa < 1:4932063/100‑1 (MQ=255) aaaaCAGATTGAAAGGATATTATACCTTGCTCTACCCTTTTTTATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCg < 1:5400408/100‑1 (MQ=255) ataCCTTGCTCTACCCTTTTTTATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGatatatat > 1:5686151/1‑100 (MQ=255) ataCCTTGCTCTACCCTTTTTTATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATCGTTATTCGatatatat > 1:4602998/1‑100 (MQ=255) cttccgatctACCCTTTTTTATAAAAAAATCACACACATTTGAGAGAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGATATATAttc < 1:2188500/93‑2 (MQ=255) gatctACCCTTTTTTATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGATATATATTGTTCtt < 1:5142921/98‑1 (MQ=255) ctACCCTTTTTTATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGATATATATTGTTCTtata < 1:5436436/100‑1 (MQ=255) aCCCTTTTTTATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGATATATATTGTTCTTATAAt > 1:1542077/1‑100 (MQ=255) aCCCTTTTTTATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGATATATATTGTTCTTATAAt > 1:3846210/1‑100 (MQ=255) ttttttATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGATATATATTGTTCTTATAATGGcc < 1:3700484/100‑1 (MQ=255) ttttttATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGATATATATTGTTCTTATAATGGcc < 1:1940066/100‑1 (MQ=255) tttATAAAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGATATATATTGTTCTTATAATGGCCaag < 1:3338527/100‑2 (MQ=255) | AAAACATTTAGCACTTATATTTAAAAAATATATAAAATATGAAAACAGATTGAAAGGATATTATACCTTGCTCTACCCTTTTTTAT‑AAAAAATCACACACATTTGAGAAAATTTGATAATGTCAATAAATCACGTCATCGACATTGTTATTCGATATATATTGTTCTTATAATGGCCAAA > NC_007793/2605169‑2605348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |