| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,544,726 | (A)7→8 | intergenic (‑55/+2) | SAUSA300_RS07525 ← / ← SAUSA300_RS07530 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,544,719 | 1 | . | A | 90.0% | 22.5 / ‑3.0 | 10 | intergenic (‑48/+9) | SAUSA300_RS07525/SAUSA300_RS07530 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base A (0/9); total (0/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
TTAATTTCGCCTTTTTAAACATAGCTCATCACCCATTTATGTGTTTATATAGAATATTAAAAAGCATTTT‑‑AAAAAAATTTATTCATCTTTACGATACACTCCATATTCTATTGGATCATTATCATCATAAAAGGCTTTTTTAGTATTAATAGTAGGCTTT > NC_007793/1544650‑1544809 | ttAATTTCGCCTTTTTAAAAATAGCTCATCACCCATTTATGTGTTTATATAGAATATTAAAAAGCATTTTA‑AAAAAAATTTATTCATCTTTACGATacag < 1:3367494/100‑2 (MQ=255) aaaTAGCTCATCACCCATTTATGTGTTTATATAGAATATTAAAAAGCATTTTA‑AAAAAAATTTATTCATCTTTACGATACACTCCATATTCTATTGGATc < 1:2367830/98‑1 (MQ=255) aaaTAGCTCATCACCCATTTATGTGTTTATATAGAATATTAAAAAGCATTTTA‑AAAAAAATTTATTCATCTTTACGATACACTCCATATTCTATTGGATc < 1:3245027/98‑1 (MQ=255) tatTAAAAAGCATTTTA‑AAAAAAATTTATTCATCTTTACGATACACTCCATATTCTATTGGATCATTATCATCATAAAAGGCTTTTTTAGTATTAAtagt < 1:3676553/100‑1 (MQ=255) aaaaaGCATTTTA‑AAAAAAATTTATTCATCTTTACGATACACTCCATATTCTATTGGATCATTATCATCATAAAAGGCTTTTTTAGTATTAATAGTAggt < 1:5790294/100‑2 (MQ=255) aaaaaGCATTTTA‑AAAAAAATTTATTCATCTTTACGATACACTCCATATTCTATTGGATCATTATCATCATAAAAGGCTTTTTTAGTATTAATAGTAGGc < 1:4060646/100‑1 (MQ=255) aaaaaGCATTTA‑‑AAAAAAATTTATTCATCTTTACGATACACTCCATATTCTTTTGGATCATTATCATCATAAAAGGCTTTTTTAGTATTAATAGTAggac < 1:5505617/100‑3 (MQ=255) aaaGCATTTTAAAAAAAAATTTATTCATCTTTACGATACACTCCATATTCTATTGGATCATTATCATCATAAAAGGCTTTTTTAGTATTAATAGTAGGCt < 1:5717563/100‑1 (MQ=255) aaaGCATTTTA‑AAAAAAATTTATTCATCTTTACGATACACTACATATTCTATTGGATCATTATCATCATAAAAGGCTTTTTTAGTATTAATAGTAGGCta < 1:4135186/100‑2 (MQ=255) aaGCATTTTA‑AAAAAAATTTATTCATCTTTACGATACACTCCATATTCTATTGGATCATTATCATCATAAAAGGCTTTTTTAGTATTAATAGTAGGCttt < 1:5307086/100‑1 (MQ=255) | TTAATTTCGCCTTTTTAAACATAGCTCATCACCCATTTATGTGTTTATATAGAATATTAAAAAGCATTTT‑‑AAAAAAATTTATTCATCTTTACGATACACTCCATATTCTATTGGATCATTATCATCATAAAAGGCTTTTTTAGTATTAATAGTAGGCTTT > NC_007793/1544650‑1544809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |