Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 2,455,331 Δ1 bp coding (999/1260 nt) SAUSA300_RS12610 → lysostaphin resistance protein A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077932,455,3300A.100.0% 865.8 / NA 218coding (998/1260 nt)SAUSA300_RS12610lysostaphin resistance protein A
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (215/3);  total (215/3)

Only 100 of 229 total aligned reads displayed.

CAGGTGTAGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAGAACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAGTAGAATCAGCAGAATCAGTTAAACAAGC  >  NC_007793/2455231‑2455429
                                                                                                   |                                                                                                   
aaGGTGTAGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAGa                                                                                                     >  1:5574571/2‑100 (MQ=255)
  gctgtAGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAGacc                                                                                                   >  1:3041222/3‑98 (MQ=255)
    taaaGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAGacctc                                                                                                 >  1:275350/4‑96 (MQ=255)
     gtAGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCa                                                                                               >  1:5700324/1‑100 (MQ=255)
     gtAGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCa                                                                                               >  1:5642551/1‑100 (MQ=255)
     gtAGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCa                                                                                               >  1:5277843/1‑100 (MQ=255)
     gtAGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGAGGCTGACGAACCAAGCATTCATGAAGGAACTGAAAAAACAG‑ACCTCa                                                                                               >  1:5509805/1‑100 (MQ=255)
       aGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAAc                                                                                             >  1:4667977/1‑100 (MQ=255)
       aGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAAc                                                                                             >  1:3411567/1‑100 (MQ=255)
       aGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAAc                                                                                             >  1:4372892/1‑100 (MQ=255)
          cccTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATc                                                                                          >  1:2294721/3‑100 (MQ=255)
          caCTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATc                                                                                          >  1:4567185/2‑100 (MQ=255)
           aCTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATca                                                                                         >  1:5239862/1‑100 (MQ=255)
           aCTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATca                                                                                         >  1:90918/1‑100 (MQ=255)
            cTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATcac                                                                                        >  1:4061215/1‑100 (MQ=255)
             tgtgtgcaCGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATcaca                                                                                       >  1:4924340/8‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATATAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:5265324/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAACAACAG‑GCCTCAACATCACAt                                                                                      >  1:5792997/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:3964694/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:4415642/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:548141/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:3868408/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:3740015/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:3627535/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:5664595/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:3082220/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:2836065/1‑100 (MQ=255)
              gCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:2447008/1‑100 (MQ=255)
              gCATCAACGGTTGGGGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACAt                                                                                      >  1:263251/1‑100 (MQ=255)
               taTCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATa                                                                                     >  1:1547879/2‑100 (MQ=255)
               cATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATa                                                                                     >  1:2893248/1‑100 (MQ=255)
               cATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATa                                                                                     >  1:2191350/1‑100 (MQ=255)
                gacAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAg                                                                                    >  1:772573/3‑100 (MQ=255)
                aTCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAg                                                                                    >  1:485204/1‑100 (MQ=255)
                 tgaaCGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAgg                                                                                   >  1:4501798/3‑100 (MQ=255)
                 tCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCCTGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAgg                                                                                   >  1:4801243/1‑100 (MQ=255)
                  aaaCGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGt                                                                                  >  1:2441484/2‑100 (MQ=255)
                    aCGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTaa                                                                                >  1:571125/1‑100 (MQ=255)
                    aCGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTaa                                                                                >  1:1063028/1‑100 (MQ=255)
                        ttGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCaa                                                                            >  1:1304143/1‑100 (MQ=255)
                        ctGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCaa                                                                            >  1:5289165/2‑100 (MQ=255)
                               tGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAAt                                                                     >  1:3231406/1‑100 (MQ=255)
                                   aaaaaTGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTaa                                                                 >  1:1712655/1‑100 (MQ=255)
                                      caTGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCa                                                              >  1:5021540/2‑100 (MQ=255)
                                         gATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCatca                                                           >  1:3428685/1‑98 (MQ=255)
                                               gAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGa                                                     >  1:2509026/1‑100 (MQ=255)
                                                 gcacaCAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATTATGATGAAGATc                                                   >  1:4314135/5‑100 (MQ=255)
                                                   ttACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCAt                                                 >  1:3828953/2‑100 (MQ=255)
                                                    tACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATg                                                >  1:5525805/1‑100 (MQ=255)
                                                     aaacgcgCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGa                                               >  1:5413311/7‑100 (MQ=255)
                                                     aCAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACGTCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGa                                               >  1:2566294/1‑100 (MQ=255)
                                                     aCAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGa                                               >  1:1009798/1‑100 (MQ=255)
                                                     aCAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGa                                               >  1:4490790/1‑100 (MQ=255)
                                                      cAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCACGATGAAGATcggaag                                              >  1:3957724/1‑95 (MQ=255)
                                                      aaGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGAc                                              >  1:619700/2‑100 (MQ=255)
                                                       tatGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACa                                             >  1:27012/3‑100 (MQ=255)
                                                       cgTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACa                                             >  1:474519/2‑100 (MQ=255)
                                                       aGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATcggaaga                                             >  1:716688/1‑94 (MQ=255)
                                                       aGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACa                                             >  1:5174121/1‑100 (MQ=255)
                                                       aGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACa                                             >  1:2992897/1‑100 (MQ=255)
                                                        gTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATTACATAGGTAATCAAACTGAATCTAATCATGATGACGATCTTGACAt                                            >  1:741288/1‑100 (MQ=255)
                                                        gTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACAt                                            >  1:5503281/1‑100 (MQ=255)
                                                        gTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACAt                                            >  1:1638618/1‑100 (MQ=255)
                                                        ctGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATcggaagag                                            >  1:883501/2‑93 (MQ=255)
                                                         aggCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATc                                           >  1:4703920/2‑100 (MQ=255)
                                                          ggCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGGAGATCATGACATCa                                          >  1:2388658/1‑100 (MQ=255)
                                                          ggCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCa                                          >  1:5371746/1‑100 (MQ=255)
                                                          ggCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCa                                          >  1:1791475/1‑100 (MQ=255)
                                                          ggCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCa                                          >  1:5428022/1‑100 (MQ=255)
                                                          ggCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCa                                          >  1:3520761/1‑100 (MQ=255)
                                                          ggCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCa                                          >  1:1886267/1‑100 (MQ=255)
                                                          ggCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCa                                          >  1:348739/1‑100 (MQ=255)
                                                            ttGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACt                                        >  1:1664641/2‑100 (MQ=255)
                                                            cTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACt                                        >  1:2014142/1‑100 (MQ=255)
                                                             tGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACtt                                       >  1:835360/1‑100 (MQ=255)
                                                              gACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTc                                      >  1:5476720/1‑100 (MQ=255)
                                                              gACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTc                                      >  1:4218180/1‑100 (MQ=255)
                                                              gACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTc                                      >  1:3182995/1‑100 (MQ=255)
                                                              gACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTc                                      >  1:1507692/1‑100 (MQ=255)
                                                              gACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTc                                      >  1:301592/1‑100 (MQ=255)
                                                              gACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTc                                      >  1:4903612/1‑100 (MQ=255)
                                                              gACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTc                                      >  1:4000104/1‑100 (MQ=255)
                                                              gACGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTc                                      >  1:194930/1‑100 (MQ=255)
                                                               ccGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCg                                     >  1:5608613/2‑100 (MQ=255)
                                                                cGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCgg                                    >  1:2039143/1‑100 (MQ=255)
                                                                cGAACCAAGCATTCATGAAGGTACTGAAAAAACAG‑ACATCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCgg                                    >  1:410369/1‑100 (MQ=255)
                                                                    gcAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTc                                >  1:139283/2‑100 (MQ=255)
                                                                    ccAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTc                                >  1:2609412/1‑100 (MQ=255)
                                                                    ccAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTc                                >  1:1576380/1‑100 (MQ=255)
                                                                    ccAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTc                                >  1:1807113/1‑100 (MQ=255)
                                                                     cAAGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCa                               >  1:3317583/1‑100 (MQ=255)
                                                                      aaGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAg                              >  1:1475921/1‑100 (MQ=255)
                                                                      aaGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAg                              >  1:5210057/1‑100 (MQ=255)
                                                                      aaGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAg                              >  1:5150069/1‑100 (MQ=255)
                                                                      aaGCATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAg                              >  1:4139940/1‑100 (MQ=255)
                                                                        ccATTCATGAAGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAGTa                            >  1:2333505/2‑100 (MQ=255)
                                                                                  aGGTACTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAGTAGAATcagcag                  >  1:3588488/1‑100 (MQ=255)
                                                                                     caCTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAGTAGAATCAGCAGAAt               >  1:3346837/2‑100 (MQ=255)
                                                                                      ccTGAAAAAACAG‑ACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAGTAGAATCAGCAGAATc              >  1:1178361/2‑100 (MQ=255)
                                                                                                   aaCCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAGTAGAATCAGCAGAATCAGTTAAACAAGc  >  1:4358211/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CAGGTGTAGCTACTGCATCAACGGTTGGTGTTGCTAAAAATGATACTGAAAATACAGTGGCTGACGAACCAAGCATTCATGAAGGTACTGAAAAAACAGAACCTCAACATCACATAGGTAATCAAACTGAATCTAATCATGATGAAGATCATGACATCACTTCGGAGTCAGTAGAATCAGCAGAATCAGTTAAACAAGC  >  NC_007793/2455231‑2455429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑