| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,436,396 | (A)7→6 | intergenic (‑48/‑232) | SAUSA300_RS12515 ← / → SAUSA300_RS12520 | alanine glycine permease/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,436,390 | 0 | A | . | 97.8% | 168.5 / ‑2.6 | 46 | intergenic (‑42/‑238) | SAUSA300_RS12515/SAUSA300_RS12520 | alanine glycine permease/membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (2/43); total (2/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 | |||||||||||
TTGTAGTTCATTGTTCTCCATAACTTCTTACCCCATCTCTGATTGATACTAAATAAATCCATAAAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGCAGG > NC_007793/2436328‑2436485 | ttGTAGTTCATTGTTCTCCATAACTTCTTACCCCATCTCTGATTGATACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATaagatcggaa > 1:4716531/1‑92 (MQ=255) tccgatctACCCCGTCTCTGATTGATACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGc < 1:609920/93‑1 (MQ=255) ccgatcttCCCCCATCTCTGATTGATACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGc < 1:5574034/96‑1 (MQ=255) ccgatcttACTCCATCTCTGATTGATACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGc < 1:3238693/96‑1 (MQ=255) cttcttACCCCATCTCTGATTGATACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCAt < 1:4922295/100‑1 (MQ=255) ttcttACCCCATCTCTGATTGATACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCaac < 1:636836/100‑3 (MQ=255) tctgtccccATCTCTGATTGATACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTGTAAATTATCGATTTTGGTACATTAATATTTGCaggg < 1:4622065/95‑4 (MQ=255) tACCCCATCTCTGATTGATACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCAt > 1:3475082/1‑100 (MQ=255) gcccATCTCTGATTGATACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGc < 1:57764/99‑1 (MQ=255) ccATCTCTGATTGATACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATAcccaatcc < 1:1601026/100‑7 (MQ=255) gattgatACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTAc < 1:2219771/100‑1 (MQ=255) gattgatACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTAc < 1:664501/100‑1 (MQ=255) gattgatACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTAc < 1:411328/100‑1 (MQ=255) gattgatACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTAc < 1:3983901/100‑1 (MQ=255) gattgatACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTAc < 1:138031/100‑1 (MQ=255) gattgatACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTAc < 1:1317930/100‑1 (MQ=255) gattgatACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTAc < 1:1162749/100‑1 (MQ=255) gattgatACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTAc < 1:3586781/100‑1 (MQ=255) gattgatACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTAc < 1:4590390/100‑1 (MQ=255) gactgatACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTAc < 1:2905991/97‑1 (MQ=255) tgacACTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACCATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGa < 1:3582882/100‑1 (MQ=255) cTAAATAAATCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAactac < 1:2827143/100‑1 (MQ=255) aataaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTAatat < 1:3175524/100‑1 (MQ=255) aataaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACtat < 1:3439905/100‑1 (MQ=255) aataaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACtat < 1:5435817/100‑1 (MQ=255) aataaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACtat < 1:5496890/100‑1 (MQ=255) aataaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACtat < 1:2905524/100‑1 (MQ=255) aataaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACtat < 1:1040782/100‑1 (MQ=255) ataaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAactactggg < 1:924285/100‑4 (MQ=255) aaatCCGT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:4845562/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTGCATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:3931726/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAgt < 1:619868/100‑2 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:1034743/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:1878507/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:2658445/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:2774257/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:2876641/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:3244227/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:3923231/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACACTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:5087733/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTCTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:5305749/100‑1 (MQ=255) aaatCCAT‑AAAAAACTTATTGACGTAATTATACTATAAATTTTCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGc < 1:3089790/100‑1 (MQ=255) tCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGCAgg < 1:2713611/100‑1 (MQ=255) tCCAT‑AAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGCAgg < 1:627196/100‑1 (MQ=255) tCCAT‑AAAAAACTCATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGCaca < 1:4917270/100‑3 (MQ=255) ccATAAAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGCAgc < 1:4238780/100‑2 (MQ=255) | TTGTAGTTCATTGTTCTCCATAACTTCTTACCCCATCTCTGATTGATACTAAATAAATCCATAAAAAAACTTATTGCCGTAATTATACTATAAATTATCGATTTTGGTACATTAATATTTGCATACCATGCAATCGTTTACAGAACTACTATAGCAGG > NC_007793/2436328‑2436485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |