| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,388,992 | Δ4 bp | coding (69‑72/144 nt) | SAUSA300_RS12250 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,388,992 | 0 | T | . | 100.0% | 13.3 / NA | 11 | coding (72/144 nt) | SAUSA300_RS12250 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (7/4); total (7/4) | |||||||||||
| * | NC_007793 | 2,388,993 | 0 | T | . | 100.0% | 13.3 / NA | 11 | coding (71/144 nt) | SAUSA300_RS12250 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (7/4); total (7/4) | |||||||||||
| * | NC_007793 | 2,388,994 | 0 | C | . | 100.0% | 13.3 / NA | 11 | coding (70/144 nt) | SAUSA300_RS12250 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (7/4); total (7/4) | |||||||||||
| * | NC_007793 | 2,388,995 | 0 | C | . | 100.0% | 13.3 / NA | 11 | coding (69/144 nt) | SAUSA300_RS12250 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (7/4); total (7/4) | |||||||||||
TCTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCC‑‑‑CGCCAACTTGCACATTATTGTAAGCTGA > NC_007793/2388906‑2389076 |||| tCTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGt < 1:3542457/100‑1 (MQ=11) ttttGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGTCt < 1:5510171/100‑1 (MQ=11) ttGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGTCTGt < 1:3039999/100‑1 (MQ=11) aCTTTTCGTCACCTTCTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGTCC‑‑‑CGCCAACTTGCACatt < 1:4218330/100‑1 (MQ=14) tggccagcTTCTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCTTACCCCAACTTGCACattat > 1:2434251/8‑100 (MQ=14) tggccagcTTCTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCTTACCCCAACTTACACattat > 1:3764257/8‑100 (MQ=14) gccagcTTCTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCTTACCCCAACTTGCACATTATTg > 1:2032795/6‑100 (MQ=11) acagcTTCTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCTTACCCCAACTTGCACATTATTga > 1:5406809/5‑99 (MQ=11) tagcTTCTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCTTACCCCAACTTGCACATTATTgaa > 1:1660695/4‑98 (MQ=11) acTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCTTACCCCAACTTGCACATTATTGAAAGCTg > 1:2077260/2‑100 (MQ=11) cTGTGTTGGGGCCCCG‑‑‑‑CCAACTTGCATTGTCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCTTACCCCAACTTGCACATTATTGAAAGCTGa > 1:4305191/1‑100 (MQ=11) |||| TCTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCC‑‑‑CGCCAACTTGCACATTATTGTAAGCTGA > NC_007793/2388906‑2389076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |