| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,086,580 | (TA)4→3 | intergenic (‑369/‑315) | SAUSA300_RS10525 ← / → SAUSA300_RS10530 | hypothetical protein/chemotaxis inhibitory protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,086,573 | 0 | A | . | 100.0% | 22.3 / NA | 8 | intergenic (‑362/‑323) | SAUSA300_RS10525/SAUSA300_RS10530 | hypothetical protein/chemotaxis inhibitory protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (5/3); total (5/3) | |||||||||||
| * | NC_007793 | 2,086,574 | 0 | T | . | 100.0% | 22.3 / NA | 8 | intergenic (‑363/‑322) | SAUSA300_RS10525/SAUSA300_RS10530 | hypothetical protein/chemotaxis inhibitory protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (5/3); total (5/3) | |||||||||||
TTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCTAAGATAAATATAGCAC > NC_007793/2086500‑2086663 || ctGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCAAAAAAAAACTAGCCCGa > 1:1991629/2‑100 (MQ=255) tGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCAAAAAAAAACTAGCCAGat > 1:5507787/1‑99 (MQ=255) aaCGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCAAAAAAAAACTAGCCCGAAgatc > 1:4762965/1‑97 (MQ=255) acccAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCAAAAAAAAACTAGCCCGAAgatcgga > 1:4632037/2‑94 (MQ=255) ccAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCA‑AAAAAAACTAGCCCGAAGGCTAGCTTa > 1:3887596/1‑100 (MQ=255) cgttATCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCAAAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCtgtgg < 1:1109673/98‑2 (MQ=25) tCTAATTTTATTTAATTAAAACAA‑‑ATATATAGCAAAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCtgcg < 1:2686236/100‑4 (MQ=25) aattaaAACAA‑‑ATATATAGCAAAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGTTGTGTCTAAGATAAATATAGcag < 1:4279133/100‑2 (MQ=21) || TTGAAAACGCCCAAGGTAATATTAACATAAAATGGCTACTATTGCATTATCTAATTTTATTTAATTAAAACAAATATATATAGCACAAAAAAACTAGCCCGAAGGCTAGCTTATGAATAGATGAAAATTTGAACACATTGCTGTGTCTAAGATAAATATAGCAC > NC_007793/2086500‑2086663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |