| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,887,849 | (T)7→6 | coding (1165/1182 nt) | SAUSA300_RS09310 ← | multidrug MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,887,843 | 0 | T | . | 90.9% | 29.1 / ‑2.7 | 11 | coding (1171/1182 nt) | SAUSA300_RS09310 | multidrug MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base . (1/9); total (1/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTCCAAACGAAATTAAATTATACAAATTAATATTATGTTATAACGACATTTATTTCAAGTCTATAACGTTAATTCTATTTACTCATTATGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGCATCAT > NC_007793/1887746‑1887915 | gCTCCAAACGAAATTAAATTATACAAATTAATATTATGTTATAACGACATTTATTTCAAGTCTATAACGTTAATTCTATTTACTCATTATGCATCTAttt < 1:3261138/100‑1 (MQ=255) ccAAACGAAATTAAATTATACAAATTAATATTATGTTATAACGACATTTATTTCAAGTCTATAACGTTAATTCTATTTACTCATTATGCATCTAtttttt < 1:2908601/100‑1 (MQ=255) cAAACGAAATTAAATTATACAAATTAATATTATGTTATAACGACATTTATTTCAAGTCTATAACGTTAATTCTATTTACTCATTATGCATCTAtttttta > 1:5294048/1‑99 (MQ=255) aaTTAATATTATGTTATAACGACATTTATTTCAAGTCTATAACGTTAATTCTATTTACTCATTATGCATCTA‑TTTTTTAGGTTGCGTATTATTCTCCTTg < 1:3409275/100‑1 (MQ=255) aTTAATATTATGTTATAACGACATTTATTTCAAGTCTATAACGTTAATTCTATTTACTCATTATGCATCTA‑TTTTTTAGGTTGCGTATTATTCTCCTTgt < 1:721889/100‑2 (MQ=255) tattatGTTATAACGACATTTATTTCAAGTCTATAACGTTAATTCTATTTACTCATTATGCATCTA‑TTTTTTAGGTTGCGTATTATTCTCCTTGAAAAcc < 1:5395607/100‑1 (MQ=255) tCAAGTCTATAACGTTAATTCTATTTACTCATTATGCATCTA‑TTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACa < 1:4763565/100‑1 (MQ=255) cTATAACGTTAATTCTATTTACTCATTATGCATCTA‑TTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAagtagt < 1:2186125/100‑1 (MQ=255) cTATAACGTTAATTCTATTTACTCATTATGCATCTA‑TTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAagtagt < 1:2257234/100‑1 (MQ=255) cTATAACGTTAATTCTATTTACTCATTATGCATCTA‑TTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAagtagt < 1:2719778/100‑1 (MQ=255) cTATAACGTTAATTCTATTTACTCATCATGCATCTA‑TTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAagtagt < 1:3693308/100‑1 (MQ=255) ataACGTTAATTCTATTTACTCATTATGCATCTA‑TTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGtagtag > 1:4528239/1‑100 (MQ=255) aCGTTAATTCTATTTACTCATTATGCATCTA‑TTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGcag < 1:2470160/100‑2 (MQ=255) tAATTCTATTTACTCATTATGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGcatcat < 1:5461471/100‑1 (MQ=255) | GCTCCAAACGAAATTAAATTATACAAATTAATATTATGTTATAACGACATTTATTTCAAGTCTATAACGTTAATTCTATTTACTCATTATGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGCATCAT > NC_007793/1887746‑1887915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |