| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 90,315 | (TA)8→6 | coding (870‑873/1752 nt) | SAUSA300_RS00415 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 90,302 | 0 | A | . | 96.5% | 100.5 / ‑2.1 | 29 | coding (857/1752 nt) | SAUSA300_RS00415 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (28/0); total (29/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_007793 | 90,303 | 0 | T | . | 96.5% | 100.6 / ‑2.4 | 29 | coding (858/1752 nt) | SAUSA300_RS00415 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (28/0); total (29/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 | |||||||||||
| * | NC_007793 | 90,304 | 0 | A | . | 96.5% | 101.0 / ‑2.7 | 29 | coding (859/1752 nt) | SAUSA300_RS00415 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (28/0); total (29/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 | |||||||||||
| * | NC_007793 | 90,305 | 0 | T | . | 96.5% | 100.4 / ‑2.1 | 29 | coding (860/1752 nt) | SAUSA300_RS00415 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (28/0); total (29/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
TATCGAATTCTTCAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAATATATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAATAG > NC_007793/90203‑90391 |||| tgccGAATTCCGCAACTACAGAAAATATATCTACAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCaa > 1:5038410/4‑100 (MQ=255) tcAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatat > 1:4197187/1‑100 (MQ=255) cAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatata > 1:1142878/1‑100 (MQ=255) cAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatata > 1:4126665/1‑100 (MQ=255) cAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatata > 1:3656550/1‑100 (MQ=255) aaCTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatataa > 1:1678146/1‑99 (MQ=255) aCTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAatatatatatataaa > 1:2595904/1‑98 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:1388836/1‑100 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:4903898/1‑100 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:5448461/1‑100 (MQ=255) ataGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATAc > 1:2913005/1‑100 (MQ=255) actatatCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACAtt > 1:5562223/3‑100 (MQ=255) tAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCg > 1:1029952/1‑100 (MQ=255) aGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑‑‑ATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACt > 1:1142419/1‑100 (MQ=255) tAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAATATATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGAc > 1:1612975/1‑100 (MQ=255) taGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATc > 1:3047421/2‑100 (MQ=255) aaGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATc > 1:5301943/1‑100 (MQ=255) aaGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACAGATc > 1:4476333/1‑100 (MQ=255) aaGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATACAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATc > 1:2323682/1‑100 (MQ=255) aaGTAATATGATACTCTTGGTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATGAGATGCAACTGATc > 1:3085067/1‑100 (MQ=255) atGATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGt > 1:1246895/1‑100 (MQ=255) gATACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTg > 1:5139912/1‑100 (MQ=255) caTACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTg > 1:3907694/2‑100 (MQ=255) gtACTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGa > 1:4629271/2‑100 (MQ=255) aCTCTTGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGAtt > 1:4572586/1‑100 (MQ=255) tGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATc > 1:3859078/1‑100 (MQ=255) tGTTAGATGATATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATc > 1:4079309/1‑100 (MQ=255) atgatATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGaa > 1:2179855/1‑100 (MQ=255) tatatGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGaaaa > 1:1162884/2‑99 (MQ=255) gatATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAAt > 1:434779/1‑100 (MQ=255) gatATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAAt > 1:3945753/1‑100 (MQ=255) gatATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAAt > 1:2746513/1‑100 (MQ=255) gatATGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAAt > 1:2091175/1‑100 (MQ=255) tatGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAATAg > 1:2472647/1‑100 (MQ=255) tatGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAATAg > 1:839426/1‑100 (MQ=255) tatGCTCGACGTCA‑‑‑‑ATATATATATATAAATTCTTTTAAAAATAATACACTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAATAg > 1:745833/1‑100 (MQ=255) |||| TATCGAATTCTTCAACTACAGAAAATATATCTATAGATATATCAAGATTTTTAGAACTAAGTAATATGATACTCTTGTTAGATGATATGCTCGACGTCAATATATATATATATATAAATTCTTTTAAAAATAATACATTAGAGACATTTGATGCGACTGATCCTGAAGTTGATTACATCACTGAAATAG > NC_007793/90203‑90391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |