Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 1,354,028 C→T Y81Y (TAC→TAT)  SAUSA300_RS06705 → secretion protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077931,354,0280CT100.0% 737.7 / NA 219Y81Y (TAC→TAT) SAUSA300_RS06705secretion protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (205/14);  total (205/14)

Only 100 of 237 total aligned reads displayed.

TTACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATACAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACAAAATAATAA  >  NC_007793/1353932‑1354117
                                                                                                 |                                                                                          
 tACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataata                                                                                        >  1:3834679/1‑100 (MQ=255)
 tACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataata                                                                                        >  1:2377285/1‑100 (MQ=255)
 tACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataata                                                                                        >  1:2015817/1‑100 (MQ=255)
  aCAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataatac                                                                                       >  1:3169512/1‑100 (MQ=255)
  aCAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataatac                                                                                       >  1:2271296/1‑100 (MQ=255)
  aCAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAaatataatac                                                                                       >  1:5919323/1‑100 (MQ=255)
      taatTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCt                                                                                   <  1:1639006/100‑1 (MQ=255)
               aaTGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGtt                                                                         >  1:1336703/1‑100 (MQ=255)
                  gATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACGCCTAG‑ATCggaagag                                                                      >  1:5543436/1‑95 (MQ=255)
                  gATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAAGATCggaaga                                                                       >  1:1260448/1‑96 (MQ=255)
                   aTAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTaa                                                                     >  1:725918/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAG‑ATCggaagagcac                                                                   >  1:4470453/1‑92 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:5593725/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:2880019/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:4698372/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:5419995/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:1227521/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:3029911/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:2092060/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:1232325/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:3099163/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:5752572/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:5982942/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:354456/1‑100 (MQ=255)
                     aaGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAga                                                                   >  1:4419274/1‑99 (MQ=255)
                     aaGTTACATGAAAGATAAAGTCAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAggg                                                                   >  1:1306352/1‑100 (MQ=255)
                      ggTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGc                                                                  >  1:5501853/2‑100 (MQ=255)
                      ccgtACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGc                                                                  >  1:5233387/4‑100 (MQ=255)
                      aGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATCAAAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAgg                                                                   >  1:4247813/1‑100 (MQ=255)
                       gctACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCa                                                                 >  1:1281397/3‑100 (MQ=255)
                       attACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCa                                                                 >  1:4796400/2‑100 (MQ=255)
                        ttACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAGGGCaa                                                                <  1:5322672/100‑1 (MQ=255)
                        ttACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaa                                                                <  1:1163039/100‑1 (MQ=255)
                        ctACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaa                                                                >  1:5263098/2‑100 (MQ=255)
                         tACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaaa                                                               >  1:2186172/1‑100 (MQ=255)
                         tACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaaa                                                               >  1:2602917/1‑100 (MQ=255)
                         tACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaaa                                                               >  1:1606229/1‑100 (MQ=255)
                          tcATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:4516076/2‑100 (MQ=255)
                          gcctGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:4445530/4‑100 (MQ=255)
                          gcctGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:3974955/4‑100 (MQ=255)
                          ccctGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAGTCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:697314/4‑100 (MQ=255)
                          aggtGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTCCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaaaa                                                              >  1:940685/4‑99 (MQ=255)
                          aCATGAAGGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:5808571/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑CTCGGTTGTAAGGCAAAg                                                              >  1:1732532/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:4983210/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:5319474/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:3676218/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:5662577/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:4360460/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:735763/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:4150445/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:1882044/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:1073398/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:21387/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:3555592/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:2803559/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAg                                                              >  1:2898287/1‑100 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAAGCaaaa                                                              >  1:3289860/1‑99 (MQ=255)
                          aCATGAAAGATAAAGTTAATGCGATATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCGAAg                                                              >  1:4513508/1‑100 (MQ=255)
                           tgtGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGa                                                             >  1:2921335/3‑100 (MQ=255)
                           cctGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGa                                                             >  1:2525691/3‑100 (MQ=255)
                           aaTGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGa                                                             >  1:1918895/2‑100 (MQ=255)
                            ctGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGGAAAGAt                                                            >  1:4602901/2‑100 (MQ=255)
                            ctGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGAt                                                            >  1:4625423/2‑100 (MQ=255)
                            aTGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGAt                                                            >  1:1114111/1‑100 (MQ=255)
                              gAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCaagagatc                                                          >  1:635763/1‑94 (MQ=255)
                              gAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTa                                                          >  1:3212427/1‑100 (MQ=255)
                              gAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTa                                                          >  1:5994145/1‑100 (MQ=255)
                               caaGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAg                                                         >  1:4030800/2‑100 (MQ=255)
                                aaGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAgg                                                        >  1:3599555/1‑100 (MQ=255)
                                    tAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGaa                                                    >  1:1411298/1‑100 (MQ=255)
                                          tAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaa                                              >  1:1795611/1‑100 (MQ=255)
                                          tAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaa                                              >  1:1861430/1‑100 (MQ=255)
                                          tAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaa                                              >  1:3465187/1‑100 (MQ=255)
                                          caaTGCGTTATAAACAAATCAAAATATAATCGCTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaa                                              >  1:1663245/2‑100 (MQ=255)
                                           aaTGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaaa                                             >  1:2416766/1‑100 (MQ=255)
                                           aaTGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGaaa                                             >  1:2400320/1‑100 (MQ=255)
                                               cGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATACTACACCTAA‑AGCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACagt                                         <  1:2499385/100‑2 (MQ=255)
                                               cGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAAcggg                                         <  1:1570819/100‑4 (MQ=255)
                                                 aggtataCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAgaga                                       >  1:3684373/4‑100 (MQ=255)
                                                    cctaCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTg                                    >  1:3728479/3‑100 (MQ=255)
                                                    acgaCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGGAACAGAGAtcg                                    >  1:1493383/4‑98 (MQ=255)
                                                     gcaCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGt                                   >  1:4314344/3‑100 (MQ=255)
                                                     ataCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAgagaacga                                   >  1:5867342/1‑96 (MQ=255)
                                                     ataCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGAtcgg                                   >  1:4647887/1‑97 (MQ=255)
                                                      taCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGtt                                  >  1:2931266/1‑100 (MQ=255)
                                                       aCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAgagacgtcag                                 >  1:437671/1‑94 (MQ=255)
                                                       aCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAaagaaagatc                                 >  1:1817004/1‑94 (MQ=255)
                                                       aCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTa                                 >  1:5491589/1‑100 (MQ=255)
                                                       aCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTa                                 >  1:492412/1‑100 (MQ=255)
                                                       aCAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGGTGTAAGGCAAAGATTAGGCGAACCATAAACagatcggaaga                                 >  1:908508/1‑92 (MQ=255)
                                                              aaaaTATAATCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAGGGTag                          <  1:512926/100‑1 (MQ=255)
                                                                     agccACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGt                   >  1:3741558/4‑100 (MQ=255)
                                                                      aTCACTTCAAAATC‑AAAAATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGtt                  <  1:3329713/100‑1 (MQ=255)
                                                                           ctcaaaatc‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGaa             >  1:5812484/2‑100 (MQ=255)
                                                                            tcaaaatc‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGaca            <  1:3186450/100‑3 (MQ=255)
                                                                            gcaaaatc‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAAc            >  1:488347/2‑100 (MQ=255)
                                                                             caaaatc‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACa           >  1:4189287/1‑100 (MQ=255)
                                                                             caaaatc‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACa           >  1:3405741/1‑100 (MQ=255)
                                                                                   c‑aaaaATTAAATATAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACAAaataa     >  1:1703623/1‑100 (MQ=255)
                                                                                                 |                                                                                          
TTACAATAATTTTATAATGATAAGTTACATGAAAGATAAAGTTAATGCGTTATATACAAATCAAAATATAATCACTTCAAAATC‑AAAAATTAAATACAATACACCTAA‑ATCGGTTGTAAGGCAAAGATTAGGCGAACCAGAAACAGAGATTGTTAAAGGTAGAGTGCGTTACGAACAAAATAATAA  >  NC_007793/1353932‑1354117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑