Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 1,094,490 C→T N162N (AAC→AAT)  SAUSA300_RS05375 → Cro/Cl family transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077931,094,4900CT99.6% 786.4 / NA 241N162N (AAC→AAT) SAUSA300_RS05375Cro/Cl family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (235/5);  minor base A (1/0);  total (236/5)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 241 total aligned reads displayed.

CAGGTCAGATAACACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAACGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTATAGGGGGGATCTTATTTGGAA  >  NC_007793/1094393‑1094562
                                                                                                 |                                                                        
caggtcagATAACACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGa                                                                        >  1:603336/1‑100 (MQ=255)
caggtcagATAACACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGa                                                                        >  1:4728842/1‑100 (MQ=255)
caggtcagATAACACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGa                                                                        >  1:3901484/1‑100 (MQ=255)
         tAACACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACaa                                                               >  1:1044061/1‑100 (MQ=255)
         tAACACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACaa                                                               >  1:3328584/1‑100 (MQ=255)
         tAACACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACaa                                                               >  1:1970064/1‑100 (MQ=255)
         caaCACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACaa                                                               >  1:5372603/2‑100 (MQ=255)
         caaCACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACaa                                                               >  1:5148832/2‑100 (MQ=255)
          tacacTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAAt                                                              >  1:3512463/2‑100 (MQ=255)
          aaCACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCCAACAAt                                                              >  1:4599622/1‑100 (MQ=255)
          aaCACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAAt                                                              >  1:2893158/1‑100 (MQ=255)
          aaCACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAAt                                                              >  1:1716821/1‑100 (MQ=255)
          aaCACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAAt                                                              >  1:4687317/1‑100 (MQ=255)
          aaCACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAAt                                                              >  1:1268148/1‑100 (MQ=255)
            cacTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGa                                                            >  1:4710092/1‑100 (MQ=255)
                  aagcaGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACg                                                      >  1:2379820/5‑100 (MQ=255)
                   ctaaGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGa                                                     >  1:2819957/4‑100 (MQ=255)
                   agtAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGa                                                     >  1:5951502/3‑100 (MQ=255)
                     tAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTATAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAAt                                                   >  1:2498782/1‑100 (MQ=255)
                     tAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAAt                                                   >  1:4185970/1‑100 (MQ=255)
                     ctggCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAAt                                                   >  1:656263/3‑100 (MQ=255)
                     caGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAAt                                                   >  1:5795753/2‑100 (MQ=255)
                      aGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATa                                                  >  1:4380163/1‑100 (MQ=255)
                      aGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATa                                                  >  1:5125488/1‑100 (MQ=255)
                      aGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATa                                                  >  1:4340430/1‑100 (MQ=255)
                      aGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATa                                                  >  1:3069083/1‑100 (MQ=255)
                      aGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATa                                                  >  1:2224525/1‑100 (MQ=255)
                      aGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATa                                                  >  1:2171205/1‑100 (MQ=255)
                      aGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATa                                                  >  1:68628/1‑100 (MQ=255)
                      aGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATa                                                  >  1:3408601/1‑100 (MQ=255)
                             cagaTATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTg                                           >  1:1777240/2‑100 (MQ=255)
                              agaTATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGt                                          <  1:5991897/100‑1 (MQ=255)
                                 tatatCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGc                                       <  1:5422627/100‑1 (MQ=255)
                                    ttCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGAc                                    >  1:4252850/2‑100 (MQ=255)
                                    gtCAATCAGAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGAc                                    >  1:1476461/2‑100 (MQ=255)
                                    atCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGAc                                    >  1:378020/1‑100 (MQ=255)
                                    atCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGAc                                    >  1:5007715/1‑100 (MQ=255)
                                    atCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGAc                                    >  1:3744450/1‑100 (MQ=255)
                                    atCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGAc                                    >  1:959588/1‑100 (MQ=255)
                                    atCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGAc                                    >  1:5258496/1‑100 (MQ=255)
                                    atCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGAc                                    >  1:861730/1‑100 (MQ=255)
                                    atCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGAc                                    >  1:1305000/1‑100 (MQ=255)
                                    atCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGAc                                    >  1:2961278/1‑100 (MQ=255)
                                     acAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACa                                   >  1:5886729/2‑100 (MQ=255)
                                      ttaGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:1385557/3‑100 (MQ=255)
                                      gaggCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:5835007/4‑100 (MQ=255)
                                      ccaGCCCAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:3857886/3‑100 (MQ=255)
                                      cAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:5572671/1‑100 (MQ=255)
                                      cAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:1914179/1‑100 (MQ=255)
                                      cAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:1954732/1‑100 (MQ=255)
                                      cAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:1086762/1‑100 (MQ=255)
                                      cAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:2041659/1‑100 (MQ=255)
                                      cAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:4919591/1‑100 (MQ=255)
                                      cAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:4231318/1‑100 (MQ=255)
                                      cAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGACAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:4402460/1‑100 (MQ=255)
                                      aggccccaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:13468/7‑100 (MQ=255)
                                      aaaGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAg                                  >  1:181598/2‑100 (MQ=255)
                                       tggCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGc                                 >  1:3102949/3‑100 (MQ=255)
                                       tcaggcaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGc                                 >  1:1497977/6‑100 (MQ=255)
                                       taGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGc                                 >  1:4276089/2‑100 (MQ=255)
                                       gtgcccaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGc                                 >  1:3240942/6‑100 (MQ=255)
                                       gaGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCAACAGc                                 >  1:4699244/2‑100 (MQ=255)
                                        aGCCCAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCt                                >  1:5807496/1‑100 (MQ=255)
                                        aGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCt                                >  1:1902840/1‑100 (MQ=255)
                                        aGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCt                                >  1:1168187/1‑100 (MQ=255)
                                        aGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCt                                >  1:5989019/1‑100 (MQ=255)
                                        aGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCt                                >  1:2191089/1‑100 (MQ=255)
                                        aGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCt                                >  1:2328928/1‑100 (MQ=255)
                                        aGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCt                                >  1:3018475/1‑100 (MQ=255)
                                        aGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCt                                >  1:4627066/1‑100 (MQ=255)
                                         tgccaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCtt                               >  1:630031/4‑100 (MQ=255)
                                         taccaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCtt                               >  1:4967338/4‑100 (MQ=255)
                                         ggccaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCtt                               >  1:4768978/4‑100 (MQ=255)
                                         gcccaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCtt                               >  1:2384460/4‑100 (MQ=255)
                                         gCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCAACAGCtt                               >  1:4355446/1‑100 (MQ=255)
                                         atgcaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCtt                               >  1:561038/4‑100 (MQ=255)
                                         agccaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCtt                               >  1:5739802/4‑100 (MQ=255)
                                         acccaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCtt                               >  1:3285861/4‑100 (MQ=255)
                                          gacaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGCCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTc                              >  1:3138013/2‑100 (MQ=255)
                                           gcaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCa                             >  1:474920/2‑100 (MQ=255)
                                           gcaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCa                             >  1:806097/2‑100 (MQ=255)
                                           gcaAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCa                             >  1:353388/2‑100 (MQ=255)
                                           atgagaagaagaCGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCa                             >  1:1654618/4‑100 (MQ=255)
                                            caAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCat                            >  1:1838086/1‑100 (MQ=255)
                                            caAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCat                            >  1:1410270/1‑100 (MQ=255)
                                            caAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCat                            >  1:1013145/1‑100 (MQ=255)
                                            caAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCat                            >  1:3918274/1‑100 (MQ=255)
                                            caAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCat                            >  1:2621288/1‑100 (MQ=255)
                                            caAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCat                            >  1:5405180/1‑100 (MQ=255)
                                                 tataggcGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTta                       >  1:4801872/7‑100 (MQ=255)
                                                  cagcccGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTtat                      >  1:5344661/6‑100 (MQ=255)
                                                   ttaccGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTtata                     >  1:780754/5‑100 (MQ=255)
                                                   ttaccGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTtaga                     >  1:3955354/5‑98 (MQ=255)
                                                   ccgaCGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTtatg                     >  1:729667/3‑99 (MQ=255)
                                                    agaCGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTtatgg                    >  1:3576799/1‑98 (MQ=255)
                                                    acccGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTATAg                    >  1:2556018/4‑100 (MQ=255)
                                                           ttGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTACAGGGGAGAt             >  1:2731929/1‑100 (MQ=255)
                                                                    aaaGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTATGGGGGAGATcggaagagc    >  1:4533801/1‑92 (MQ=255)
                                                                    aaaGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTATGGGGCAGATcggaagagc    >  1:1059578/1‑92 (MQ=255)
                                                                     aaGCACGAGATAATCATCGTTTGTCAAATGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTAGAGGGGAGATcggaagagca   >  1:1447897/1‑91 (MQ=255)
                                                                                                 |                                                                        
CAGGTCAGATAACACTTAATTTAGGCAAAGAGATATATCAAGCACAAGAAGAAGACGTTTTGTATTTTAAAGCACGAGATAATCATCGTTTGTCAAACGAATCAAACAATGAAACACGAATACTTATTGTAGCGACAGCTTCATATTTATAGGGGGGATCTTATTTGGAA  >  NC_007793/1094393‑1094562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑