| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007790 | 1,276 | C→A | intergenic (+280/‑303) | SAUSA300_RS14705 → / → SAUSA300_RS14710 | replication protein/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007790 | 1,276 | 0 | C | A | 80.0% | 22.3 / 4.1 | 15 | intergenic (+280/‑303) | SAUSA300_RS14705/SAUSA300_RS14710 | replication protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (3/0); new base A (0/12); total (3/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.20e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.18e-01 | |||||||||||
AGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGAAGTTTTAAAGGATTTTATGCTAATTTTT‑AATTTGCATGTAAATGGGCAGTGTT > NC_007790/1184‑1359 | gatctcaTCACTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTga < 1:2205016/94‑2 (MQ=255)aGATCTATCATTTTTGAATGATAGCAACTTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAAGTTCTAAGTTTTTAATAAGAAAAGCCCTGc < 1:5859214/100‑1 (MQ=255) tgtcttGATTTTTGAT‑AAAAACGCCCTACAGGAATTTAGAAAAACGTGGGGAAGTTTTAAAGAATTTTATGCTAATTTTT‑AATTTGCATGTAAATGGGCa > 1:3865188/3‑100 (MQ=255) ttctaagtttttGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGc < 1:1058667/93‑1 (MQ=255) ttctaagtttttGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGc < 1:3773216/93‑1 (MQ=255) ttctaagtttttGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGc < 1:5884527/93‑1 (MQ=255) ccttgATTTTTGAT‑AAAAACGCCCTACAGGAATTTAGAAAAACGTGGGGAAGTTTTAAAGAATTTTATGCTAATTTTT‑AATTTGCATGTAAAGGGGCAga > 1:63999/5‑99 (MQ=255) taagtttttGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGCAgt < 1:3292936/96‑1 (MQ=255) taagtttttGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGCAgt < 1:5848628/96‑1 (MQ=255) taagtttttGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGCAgt < 1:5951224/96‑1 (MQ=255) taagtttttGATAAGAAAAGCCCGGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGCAgt < 1:3021174/96‑1 (MQ=255) taagttttaGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGCAgt < 1:4753754/96‑1 (MQ=255) tgATTTTTGAT‑AAAAACGCCCTACAGGAATTTAGAAAAACGTGGGGAAGTTTTAAAGAATTTTATGCTAATTTTT‑AATTTGCATGTAAATggtgcagatc > 1:4254038/2‑92 (MQ=255) aagtttttGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGCAgta < 1:3324491/97‑2 (MQ=255) agtttttGATAAGAAAAGCCCTGCAGGAATTTAGAAAAACATGGGGAAGTTTTAAAGTATTTTATGCTAATTTTTAAATTTGCATGTAAATGGGCAgtat < 1:2243612/98‑3 (MQ=255) | AGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGCAGGAATTTAGAAAAACATGTGGAAGTTTTAAAGGATTTTATGCTAATTTTT‑AATTTGCATGTAAATGGGCAGTGTT > NC_007790/1184‑1359 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |