Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007790	1,187	C→T	intergenic (+191/‑392)	SAUSA300_RS14705 → / → SAUSA300_RS14710	replication protein/membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007790	1,187	0	C	T	100.0%	10.3 / NA	5	intergenic (+191/‑392)	SAUSA300_RS14705/SAUSA300_RS14710	replication protein/membrane protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (2/3);  total (2/3)

AAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGC  >  NC_007790/1110‑1283                                                                              |                                                                                                 aaaagtgtgACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCa                                                                            <  1:3997680/92‑1 (MQ=255)               aCAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGc                                                              >  1:1503774/1‑100 (MQ=255)               aCAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGc                                                              <  1:5337869/100‑1 (MQ=255)                         aTGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAg                                                    <  1:1397213/100‑1 (MQ=255)                                                           cctgtCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTg                  >  1:1325821/5‑100 (MQ=255)                                                                           aGATCTATCATTTTTGAATGATAGCAACTTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAAGTTCTAAGTTTTTAATAAGAAAAGCCCTGc  <  1:5859214/100‑1 (MQ=255)                                                                              |                                                                                                 AAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTCTCGATTTTTGATAAAAAACGCCCTGC  >  NC_007790/1110‑1283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑