Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007790	691	709	19	1 [0]	[0] 41	SAUSA300_RS14705	replication protein

TCGGCAATCAAAGAGACCTCAAAATATTCGGTTAAATCATCTGATTTTTTAACTGATGATGATG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTAT  >  NC_007790/700‑807           |                                                                                                   gggccactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAg          >  1:5068987/11‑100 (MQ=255) ctaacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAg          >  1:5503773/11‑100 (MQ=255) cacccactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAg          >  1:520800/11‑100 (MQ=255) ataacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAg          >  1:5889292/11‑100 (MQ=255) ataacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAg          >  1:2923452/11‑100 (MQ=255) ataacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAg          >  1:2630431/11‑100 (MQ=255)  taacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAgg         >  1:5421800/10‑100 (MQ=255)  atacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAgg         >  1:4765385/10‑100 (MQ=255)   cacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:5829283/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCGTCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:4233513/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACGAAAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAgg         >  1:3129256/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAgga        >  1:956411/9‑99 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:5528067/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:5812252/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:5120625/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:5851325/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:4709477/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:4006692/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:1519846/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:2166547/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:2581656/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:291100/9‑100 (MQ=255)   aacactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGt        >  1:3585548/9‑100 (MQ=255)    tcactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAggat       >  1:3609182/8‑98 (MQ=255)    ccactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGtt       >  1:3660037/8‑100 (MQ=255)    ccactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGtt       >  1:4888556/8‑100 (MQ=255)    acactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGtt       >  1:1226597/8‑100 (MQ=255)    acactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGtt       >  1:823842/8‑100 (MQ=255)    acactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGtt       <  1:2304890/93‑1 (MQ=255)    acactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTCAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGtt       >  1:5588745/8‑100 (MQ=255)     ccctcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGttt      >  1:517141/7‑100 (MQ=255)     cactcgaaGAGACATCAGAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGttt      <  1:1525180/94‑1 (MQ=255)     cactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGttt      >  1:2783872/7‑100 (MQ=255)     cactcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACA‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGttt      >  1:4067264/7‑100 (MQ=255)      cctcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACCGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTg     >  1:5385068/6‑100 (MQ=255)       ctcgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGt    >  1:5412572/5‑100 (MQ=255)         cgaaGAGACATCAAAATATTCCGTTAAATCCTCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTAt  >  1:933993/3‑100 (MQ=255)         cgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTAt  >  1:3707978/3‑100 (MQ=255)         cgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTAt  >  1:4962983/3‑100 (MQ=255)         cgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTAt  >  1:4493320/3‑100 (MQ=255)         cgaaGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTAt  >  1:1823714/3‑100 (MQ=255)           |                                                                                                   TCGGCAATCAAAGAGACCTCAAAATATTCGGTTAAATCATCTGATTTTTTAACTGATGATGATG‑AAAAAAATCAAGAAATTGTAAGTGATTTAGAAAAAGGTTTGTAT  >  NC_007790/700‑807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑