Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007793	2198649	2198722	74	1 [0]	[0] 1	SAUSA300_RS11200	histidine kinase

GGGACTGTGGATTTATCAACTTGATAAGCATGAGTCTAGTACGATTATTTTAATGATTTTTCTCATCGGCATCATTTTATTATCCATTTGGACGCGGTCC  >  NC_007793/2198723‑2198822 |                                                                                                    gggACTGTGGATTTATCAACTTGATAAGCATGAGTCTAGTAAGATTATTTTAATGATTTTTCTCATCGGCATCATTTTATTATCCATTTGGACGCGGTcc  >  1:3210851/1‑100 (MQ=255) |                                                                                                    GGGACTGTGGATTTATCAACTTGATAAGCATGAGTCTAGTACGATTATTTTAATGATTTTTCTCATCGGCATCATTTTATTATCCATTTGGACGCGGTCC  >  NC_007793/2198723‑2198822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑