Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007790	1066	1085	20	1 [0]	[0] 1	SAUSA300_RS14705/SAUSA300_RS14710	replication protein/membrane protein

GAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTC‑TTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGT  >  NC_007790/967‑1065                                                                                                    | gAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTTTTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCtgt  <  1:2589309/100‑1 (MQ=255)                                                                                                    | GAAAAGCAAAATTATTATTTAAGACATTAGTGTTGACTAATGTC‑TTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGT  >  NC_007790/967‑1065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑