Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007793	2562452	2562453	2	1 [0]	[0] 1	SAUSA300_RS13180	alanine glycine permease

TTAGGCGAATTGTTGTTGAGCAATACAAGATTTAATTCATTTGTTGATATTGCAAATGAATATTTAGGCCCTTTTGGTGGCTTTGTCATTGGCTGGACTT  >  NC_007793/2562353‑2562452                                                                                                   |  ttAGGCGAATTGTTGTTGAGCAATACAAGATTTAATTCATTTGTTGATATTGCAAATGAATATTTAGGCCCTTTTGGTGGCTTTGTCATTGGCTGGACtg  <  1:3753466/100‑2 (MQ=255)                                                                                                   |  TTAGGCGAATTGTTGTTGAGCAATACAAGATTTAATTCATTTGTTGATATTGCAAATGAATATTTAGGCCCTTTTGGTGGCTTTGTCATTGGCTGGACTT  >  NC_007793/2562353‑2562452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑