Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_007793	1591848	1591907	60	5 [0]	[0] 1	SAUSA300_RS07855	integrase

ATAAGAAAGTTACCACGCACACATTTAGACATACACACATAACTTTATTAGTAGAAATGAATGTTTCTTTAAAAGCAATTATGAAAAGGGTAGGACATGT  >  NC_007793/1591748‑1591847                                                                                                    | atatGAAAGTTACCCCGCACACATTTAGACATACACACATAACTTTATTAGTAGAAATGAATGTTTCTTTAAAAGCAATTATGAAAAGGGTAGGACATGt  <  1:1747782/100‑1 (MQ=255) aTAAGAAAGTTACCACGCACACATTTAGACATACACACATAACTTTATTAGTAGAAATGAATGTTTCTTTAAAAGCAATTATGAAAAGGGTAGGACATGt  <  1:1294252/100‑1 (MQ=255) aTAAGAAAGTTACCACGCACACATTTAGACATACACACATAACTTTATTAGTAGAAATGAATGTTTCTTTAAAAGCAATTATGAAAAGGGTAGGACATGt  <  1:1403669/100‑1 (MQ=255) aTAAGAAAGTTACCACGCACACATTTAGACATACACACATAACTTTATTAGTAGAAATGAATGTTTCTTTAAAAGCAATTATGAAAAGGGTAGGACATGt  <  1:2139329/100‑1 (MQ=255) aTAAGAAAGTTACCACGCACACATTTAGACATACACACATAACTTTATTAGTAGAAATGAATGTTTCTTTAAAAGCAATTATGAAAAGGGTAGGACATGt  <  1:4650855/100‑1 (MQ=255)                                                                                                    | ATAAGAAAGTTACCACGCACACATTTAGACATACACACATAACTTTATTAGTAGAAATGAATGTTTCTTTAAAAGCAATTATGAAAAGGGTAGGACATGT  >  NC_007793/1591748‑1591847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑