Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	2,357,120	Δ1 bp	intergenic (‑220/+318)	cbiO ← / ← SAUSA300_RS12015	energy‑coupling factor transporter ATPase/50S ribosomal protein L17

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	2,357,119	0	G	.	100.0%	74.4 / NA	20	intergenic (‑219/+319)	cbiO/SAUSA300_RS12015	energy‑coupling factor transporter ATPase/50S ribosomal protein L17
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (1/19);  total (1/19)

ATAAGGACTTTTATTCCTCTCTAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGTGGTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTT  >  NC_007793/2357046‑2357198                                                                          |                                                                                aTAAGGACTTTTATTCCTCTCTAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACta                                                      <  1:1357716/100‑2 (MQ=255)     ggACTTTTATTCCTCTCTAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCAc                                                  <  1:3621541/100‑1 (MQ=255)      gACTTTTATTCCTCTCTAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCagc                                                 <  1:3319614/100‑3 (MQ=255)           ctcttccgatctAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACttcatt                                            <  1:3800902/91‑1 (MQ=255)              ttCCTCTCTAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAg                                         <  1:4629078/100‑1 (MQ=255)               tCCTCTCTAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAgg                                        <  1:3940549/100‑2 (MQ=255)                 cgatctAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAgcat                                      <  1:315209/97‑4 (MQ=255)                  tctctAACGATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCt                                     <  1:6027176/100‑1 (MQ=255)                  tctctAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCt                                     <  1:3082732/100‑1 (MQ=255)                  tctctAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCt                                     <  1:5828185/100‑1 (MQ=255)                  tctctAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGCTTGATTCAACGATAATACTTTCACTTCATTCAGTTCt                                     <  1:770336/100‑1 (MQ=255)                  gatttAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCt                                     <  1:4437807/96‑1 (MQ=255)                  gatctAGCAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCt                                     <  1:4134768/98‑1 (MQ=255)                    tctAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCTAg                                   <  1:547250/100‑1 (MQ=255)                     ctAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCTAGt                                  >  1:812878/1‑100 (MQ=255)                                gTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCTAGTGAAATTGAtgc                       <  1:2267799/100‑3 (MQ=255)                                              aaaataaaTGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTtcatca         <  1:5288278/100‑1 (MQ=255)                                                  taaatGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTcatcatggg     <  1:2673515/100‑4 (MQ=255)                                                     atGATTTACTAATATAGGTGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATAttttt  <  1:4976141/100‑1 (MQ=255)                                                     atGATTTACTAATATAGGGGT‑GTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATAttttt  <  1:3268940/100‑1 (MQ=255)                                                                          |                                                                                ATAAGGACTTTTATTCCTCTCTAACAATTATGTATAAACGTTAATAAAATAAATGATTTACTAATATAGGGGTGGTCGCGTTTGATTCAACGATAATACTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTT  >  NC_007793/2357046‑2357198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑