Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	973,711	Δ1 bp	pseudogene (196/373 nt)	SAUSA300_RS04780 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	973,709	0	A	.	100.0%	38.5 / NA	11	pseudogene (198/373 nt)	SAUSA300_RS04780	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (0/11);  total (0/11)

TTACCTCTTGTGGGTTGAAAAATGGATCATCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTTAAATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTACAAGTAAAATCAAAAATATGCTAA  >  NC_007793/973635‑973779                                                                           |                                                                       tccgatctTGTGGGTTGAAAAATGGATCATCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGc                                              <  1:1252440/95‑1 (MQ=255) tccgatctTGTGGGTTGAAAAATGGATCATCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGc                                              <  1:1654505/95‑1 (MQ=255)  gatctctTGTGGGTTGAAAAATGGATCGTCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGCa                                             <  1:3137611/97‑1 (MQ=255)    gatctTGTGGGTTGAAAAATGGATCATCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGCATc                                           <  1:3232004/98‑1 (MQ=255)               ttGAAAAATGGATCATCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCctt                                <  1:4046765/100‑1 (MQ=255)                  aaaaaTGGATCATCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCcttctt                             <  1:4696141/100‑1 (MQ=255)                    aaaTGGATCATCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGt                           <  1:1313939/100‑1 (MQ=255)                      aTGGATCATCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTAc                         <  1:3046376/100‑1 (MQ=255)                      aTGGATCATCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTAc                         <  1:4007720/100‑1 (MQ=255)                                           tcttcttTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTACAAGTAAAATCAAAAATATGCt    <  1:3805660/100‑1 (MQ=255)                                             ttcttTTTCGAAGATGACATTTGATACTTT‑AATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTACAAGTAAAATCAAAAATATGCtag  <  1:1869705/100‑2 (MQ=255)                                                                           |                                                                       TTACCTCTTGTGGGTTGAAAAATGGATCATCAGAGATAGACTTCTTCTTTTTCGAAGATGACATTTGATACTTTAAATCTTCTAAAACCATAACTTGTCGCATCAAAAATGCCTTCTTGTACAAGTAAAATCAAAAATATGCTAA  >  NC_007793/973635‑973779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑