| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 613,711 | Δ1 bp | coding (2565/2844 nt) | SAUSA300_RS02915 → | serine‑aspartate repeat‑containing protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 613,711 | 0 | C | . | 89.3% | 30.6 / 7.2 | 28 | coding (2565/2844 nt) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base . (25/0); total (27/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.51e-01 | |||||||||||
CTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAG > NC_007793/613615‑613781 | ctcagactcagaCAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCg > 1:3540752/1‑100 (MQ=255) cgcagacAGCGACTCAGACTCAGACAGCGACCCAGACCCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGACAGCGCCTCAGA‑TCGGaagagc > 1:3590098/3‑95 (MQ=11) caggcAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGTAACTCAGA‑TCGGaagagcac > 1:5832033/1‑93 (MQ=11) cagatAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACCCAGA‑TCGGaagagcac > 1:4945394/1‑93 (MQ=14) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCTAATCAGA‑TCGGaagagcac > 1:3944386/1‑93 (MQ=11) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:4953360/1‑93 (MQ=11) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:2598541/1‑93 (MQ=11) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:324243/1‑93 (MQ=14) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCAACCCAGA‑TCGGaagagcac > 1:4754719/1‑93 (MQ=14) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:81406/1‑93 (MQ=11) cagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcac > 1:4584388/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGTGACTCAGA‑TCGGaagagcac > 1:3926645/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCCCCTCAGA‑TCGGaagagcac > 1:2331947/1‑93 (MQ=14) cagacAGCGATTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGTGATTCAGA‑TCGGaagagcac > 1:437002/1‑93 (MQ=14) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGA‑TCGGaagagcac > 1:513976/1‑93 (MQ=17) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGA‑TCGGaagagcac > 1:4727300/1‑93 (MQ=17) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGCCTCAGACAGCGACTCAGACTCAGATAGAGACTCAGA‑TCGGaagagcac > 1:1120207/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACCCAGA‑TCGGaagagaca > 1:5687576/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACACAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGC‑ACTCAGA‑TCGGaagagcaca > 1:2755015/1‑92 (MQ=14) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:3854234/1‑93 (MQ=11) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:2124420/1‑93 (MQ=11) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACCCAGA‑TCGGaagagcac > 1:4036641/1‑93 (MQ=11) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGAGACTCAGA‑TCGGaagagcac > 1:2184887/1‑93 (MQ=11) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCAACTCAGA‑TCGGaagagcac > 1:2171200/1‑93 (MQ=14) cagacAGCGACTCAGACTCAGACAGCGACTCAGATTTAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:2424658/1‑93 (MQ=14) cagacAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAACGACTCAGA‑TCGGaagagcac > 1:5859409/1‑93 (MQ=17) tgacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCGACTCAGA‑TCGGaagagcaca > 1:2968376/2‑92 (MQ=14) agacagcgactcagactcagacagcgactcagactcAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACCCAGA‑TCGGaagagcaca > 1:4996367/1‑92 (MQ=14) acAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcacacg > 1:2293262/1‑90 (MQ=14) aCTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACtcagattc < 1:3530089/100‑1 (MQ=255) tcagattcagacAGCGACTCAGACTCGGATAGCGACTCAGACTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACtcagattcag > 1:4671529/1‑100 (MQ=11) actcagactcagatagcgactcagactcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTc > 1:2080819/1‑100 (MQ=255) cagactcagatagcgactcagactcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGa > 1:4170049/1‑100 (MQ=255) agcgactcagactcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACtcag > 1:4738035/1‑100 (MQ=255) | CTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGACTCAG > NC_007793/613615‑613781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |