Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 593,859 Δ1 bp coding (27/472 nt) SAUSA300_RS02840 → 30S ribosomal protein S7

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_007793593,8590T.99.9% 13877.5 / ‑1.3 3424coding (27/472 nt)SAUSA300_RS0284030S ribosomal protein S7
Reads supporting (aligned to +/- strand):  ref base T (2/0);  new base . (3366/53);  total (3371/53)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01

Only 100 of 3429 total aligned reads displayed.

AAAACTAAGAATTTAGTTTTTAATTAAATCTTAAACTTAAAATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAATAAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGCACAAAGAA  >  NC_007793/593760‑593957
                                                                                                   |                                                                                                  
                               taaacttaaaATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAAct                                                                    >  1:145899/1‑100 (MQ=255)
                                         gcgggggatatAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGt                                                          >  1:5828642/8‑100 (MQ=255)
                                            aaaggacccaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAAc                                                       >  1:1967082/10‑100 (MQ=255)
                                              tAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTa                                                     >  1:4550274/1‑100 (MQ=255)
                                              tAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTa                                                     >  1:4798188/1‑100 (MQ=255)
                                               catacAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTaa                                                    >  1:3412542/2‑100 (MQ=255)
                                               aaTATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTaa                                                    >  1:4354673/1‑100 (MQ=255)
                                                 tataAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaat                                                  >  1:5608310/1‑100 (MQ=255)
                                                 actaAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaat                                                  >  1:4076849/3‑100 (MQ=255)
                                                   taAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatta                                                >  1:943646/1‑100 (MQ=255)
                                                    tgggaaggGAGGATTTACATTATGCCTCGTAAAGGATTAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                               >  1:3706584/3‑100 (MQ=255)
                                                    tgcagggggAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                               >  1:5504666/7‑100 (MQ=255)
                                                    aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                               >  1:2643728/1‑100 (MQ=255)
                                                    aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                               >  1:4402731/1‑100 (MQ=255)
                                                      cgctgggAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaatt                                             >  1:4024018/5‑100 (MQ=255)
                                                      aaaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaatt                                             >  1:1134196/3‑100 (MQ=255)
                                                       gcaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGGCGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                            >  1:123707/3‑100 (MQ=255)
                                                       ctaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                            >  1:3465854/3‑100 (MQ=255)
                                                       ctaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                            >  1:4469203/3‑100 (MQ=255)
                                                       ccaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACCAAattaatta                                            >  1:2021837/3‑100 (MQ=255)
                                                       ccaggGAGGATCTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                            >  1:5772497/3‑100 (MQ=255)
                                                        caggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAAttaattaa                                           >  1:3295141/2‑100 (MQ=255)
                                                         aggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAAc                                          >  1:5872974/1‑100 (MQ=255)
                                                         aggGAGGATTTACATTATGCCTCGT‑AAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCGATTCATAACTCTAAGTTAGTAACTAAATTAATTAACa                                         >  1:3244608/1‑100 (MQ=255)
                                                                aactACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTa                                   >  1:119197/4‑100 (MQ=255)
                                                                   tACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGt                                >  1:4753983/1‑100 (MQ=255)
                                                                   tACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGt                                >  1:1065272/1‑100 (MQ=255)
                                                                       ttATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGa                            >  1:1590640/1‑100 (MQ=255)
                                                                       gtATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGa                            >  1:3657268/2‑100 (MQ=255)
                                                                       gcaTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGa                            >  1:2939373/3‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGGCGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                           >  1:4863012/1‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAAGTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                           >  1:2230770/1‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                           >  1:892207/1‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                           >  1:3890153/1‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                           >  1:4504682/1‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                           >  1:1644875/1‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                           >  1:715409/1‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAAAt                           >  1:2886505/1‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAAAt                           >  1:1764259/1‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGCTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                           >  1:1401790/1‑100 (MQ=255)
                                                                        tATGCCTCGTAAAGGATCAATACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTACGTTAGAt                           >  1:5142264/1‑100 (MQ=255)
                                                                        cgcgggtCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGac                           >  1:616874/7‑99 (MQ=255)
                                                                         ctGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacg                          >  1:4984478/2‑98 (MQ=255)
                                                                         ccgCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                          >  1:2432447/3‑100 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGagg                          >  1:1000186/1‑98 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGaga                          >  1:2834792/1‑98 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacg                          >  1:5408746/1‑98 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacg                          >  1:2538094/1‑98 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGGTg                          >  1:3525373/1‑100 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAta                          >  1:566767/1‑99 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                          >  1:5965694/1‑100 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                          >  1:5356733/1‑100 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                          >  1:3134080/1‑100 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                          >  1:1919736/1‑100 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                          >  1:37556/1‑100 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                          >  1:3617954/1‑100 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                          >  1:2270904/1‑100 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                          >  1:3355154/1‑100 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGCTAGAta                          >  1:4604328/1‑99 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTAAGTTAGAtc                          >  1:2709057/1‑99 (MQ=255)
                                                                         aTGCCTCGTAAAGGATCAGCACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacg                          >  1:4655743/1‑98 (MQ=255)
                                                                          tGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATgg                         >  1:1691380/1‑100 (MQ=255)
                                                                          tGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATgg                         >  1:4916610/1‑100 (MQ=255)
                                                                          tGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAAgg                         >  1:4186536/1‑100 (MQ=255)
                                                                           tccTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGt                        >  1:2372743/2‑100 (MQ=255)
                                                                           gCCTCGTAAAGGATCAGTGCCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATgat                        >  1:2595599/1‑98 (MQ=255)
                                                                           gCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATgga                        >  1:6011080/1‑99 (MQ=255)
                                                                           gCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGt                        >  1:4242158/1‑100 (MQ=255)
                                                                           gCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGt                        >  1:1524714/1‑100 (MQ=255)
                                                                            ccTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGGTGGTa                       <  1:1808258/100‑1 (MQ=255)
                                                                             cccGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTaa                      >  1:663273/3‑100 (MQ=255)
                                                                             cTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacgatac                      <  1:2183374/100‑7 (MQ=255)
                                                                             cTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTaa                      >  1:5103912/1‑100 (MQ=255)
                                                                             cTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGACAGTaa                      >  1:766348/1‑100 (MQ=255)
                                                                                     cccgcggTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGaa              >  1:471039/7‑100 (MQ=255)
                                                                                        tCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAg           >  1:3579367/1‑100 (MQ=255)
                                                                                        acAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAg           >  1:306284/2‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:2485743/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:2998278/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:503558/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:828179/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:3191412/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:5707120/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:2124611/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:2073795/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:1289766/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:5917804/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:1875826/1‑100 (MQ=255)
                                                                                         cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:4303878/1‑100 (MQ=255)
                                                                                         agttACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc          >  1:2329444/4‑100 (MQ=255)
                                                                                          ggTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGca         >  1:5197998/2‑100 (MQ=255)
                                                                                          ggTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGca         >  1:3813977/2‑100 (MQ=255)
                                                                                           ttACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGcac        >  1:1344078/2‑100 (MQ=255)
                                                                                           tgaCCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGcac        >  1:4147117/3‑100 (MQ=255)
                                                                                           gTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGcac        >  1:2768907/1‑100 (MQ=255)
                                                                                           gTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGcac        >  1:5460462/1‑100 (MQ=255)
                                                                                           gTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGCgggagatcgg        >  1:524610/1‑92 (MQ=255)
                                                                                             aCCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGCACaa      >  1:3954147/1‑100 (MQ=255)
                                                                                             aCCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGCACaa      >  1:5566617/1‑100 (MQ=255)
                                                                                             aCCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGCACaa      >  1:5293801/1‑100 (MQ=255)
                                                                                                   |                                                                                                  
AAAACTAAGAATTTAGTTTTTAATTAAATCTTAAACTTAAAATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAATAAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGCACAAAGAA  >  NC_007793/593760‑593957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑