| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 460,962 | Δ5 bp | coding (324‑328/678 nt) | SAUSA300_RS02185 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 460,962 | 0 | T | . | 100.0% | 54.9 / NA | 15 | coding (324/678 nt) | SAUSA300_RS02185 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (12/3); total (12/3) | |||||||||||
| * | NC_007793 | 460,963 | 0 | A | . | 100.0% | 54.9 / NA | 15 | coding (325/678 nt) | SAUSA300_RS02185 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (12/3); total (12/3) | |||||||||||
| * | NC_007793 | 460,964 | 0 | C | . | 100.0% | 54.9 / NA | 15 | coding (326/678 nt) | SAUSA300_RS02185 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (12/3); total (12/3) | |||||||||||
| * | NC_007793 | 460,965 | 0 | A | . | 100.0% | 54.9 / NA | 15 | coding (327/678 nt) | SAUSA300_RS02185 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (12/3); total (12/3) | |||||||||||
| * | NC_007793 | 460,966 | 0 | G | . | 100.0% | 54.9 / NA | 15 | coding (328/678 nt) | SAUSA300_RS02185 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (12/3); total (12/3) | |||||||||||
AAAAGCAAAATTTTGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAATACAGCTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTAAAAGATGTAAATTT > NC_007793/460886‑461033 ||||| aaaaGCAAAATTTTGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTaaag < 1:3716902/100‑2 (MQ=255) tGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACggagatcg > 1:4613748/1‑94 (MQ=255) tGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCaaa > 1:5481483/1‑100 (MQ=255) tGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTccggctg < 1:4186653/100‑7 (MQ=255) ctatTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTg > 1:4494670/2‑100 (MQ=255) ctatTTCTAATGTAGATATAATTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTg > 1:1679377/2‑100 (MQ=255) cacgtCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGa > 1:2743341/5‑100 (MQ=255) aaTGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTa > 1:1161321/1‑100 (MQ=255) aaTGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTa > 1:2587770/1‑100 (MQ=255) aaTGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTa > 1:2875015/1‑100 (MQ=255) aaTGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTa > 1:3884615/1‑100 (MQ=255) aaTGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTa > 1:4516696/1‑100 (MQ=255) tGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTaaa < 1:5369321/100‑1 (MQ=255) tgttgtAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTAAAAGATGTAAAttt > 1:1892831/1‑100 (MQ=255) ccttgtAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTAAAAGATGTAAAttt > 1:2314071/3‑100 (MQ=255) ||||| AAAAGCAAAATTTTGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAATACAGCTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTAAAAGATGTAAATTT > NC_007793/460886‑461033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |