| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,000,301 | 4 bp→ACGA | noncoding (394‑397/2926 nt) | SAUSA300_RS10040 ← | 23S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,000,301 | 0 | C | A | 100.0% | 14.5 / NA | 13 | noncoding (397/2926 nt) | SAUSA300_RS10040 | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (13/0); total (13/0) | |||||||||||
| * | NC_007793 | 2,000,302 | 0 | A | C | 100.0% | 14.5 / NA | 13 | noncoding (396/2926 nt) | SAUSA300_RS10040 | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (13/0); total (13/0) | |||||||||||
| * | NC_007793 | 2,000,303 | 0 | A | G | 100.0% | 14.4 / NA | 13 | noncoding (395/2926 nt) | SAUSA300_RS10040 | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (13/0); total (13/0) | |||||||||||
| * | NC_007793 | 2,000,304 | 0 | C | A | 100.0% | 14.4 / NA | 13 | noncoding (394/2926 nt) | SAUSA300_RS10040 | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (13/0); total (13/0) | |||||||||||
ATTTAGCCTTAGGAGATGGTCCTCCCAGATTCCGACGGAATTTCACGTGTTCCGTCGTACTCAGGATCCACTCAAGAGAGACAACATTTTCGACTACAGGATTATTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCG > NC_007793/2000220‑2000367 |||| aTTTAGCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGACCCACTCAGGAGAGAACGAAGTTTTGACTACAgg > 1:3966395/1‑100 (MQ=11) ttAGCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggc > 1:1188375/1‑98 (MQ=11) ttAGCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggc > 1:2052484/1‑98 (MQ=11) ttAGCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggc > 1:5207377/1‑98 (MQ=11) tAGCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggct > 1:1831766/1‑97 (MQ=11) tAGCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggct > 1:1987959/1‑97 (MQ=11) tAGCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggct > 1:587029/1‑97 (MQ=11) cgCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggctg > 1:4134688/2‑96 (MQ=11) aGCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggctg > 1:2431906/1‑96 (MQ=11) aGCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggctg > 1:4082830/1‑96 (MQ=11) aGCCTTGGGAGATGGTCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggcag > 1:859698/1‑96 (MQ=11) aGCCTTGGGAGATGGGCCTCCCGGATTCCGACGGAATTTCACGTGTTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAgggctg > 1:1710462/1‑96 (MQ=11) gtTCCGCCGTACTCAGGATCCACTCAGGAGAGAACGAAGTTTTGACTACAGGGCTGTTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATgtcg > 1:4939747/1‑100 (MQ=2) |||| ATTTAGCCTTAGGAGATGGTCCTCCCAGATTCCGACGGAATTTCACGTGTTCCGTCGTACTCAGGATCCACTCAAGAGAGACAACATTTTCGACTACAGGATTATTACCTTCTTTGATTCATCTTTCCAGATGATTCGTCTAATGTCG > NC_007793/2000220‑2000367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |