Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_007793	1,957,938	C→T	intergenic (‑699/‑184)	SAUSA300_RS09685 ← / → SAUSA300_RS09690	gamma‑hemolysin subunit A/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007793	1,957,938	0	C	T	100.0%	17.4 / NA	7	intergenic (‑699/‑184)	SAUSA300_RS09685/SAUSA300_RS09690	gamma‑hemolysin subunit A/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (0/7);  total (0/7)

CGCATGTACTTCGTTTTACTGTCCACGCATGGTCGTTGACTTATTTATATTATAATATAAATATTTTATTTTTCAATACTTAATTTCAAAAATCCCCTATGAAAATGTTGATGAGCTACATCTTTAAATCTTATTATACATTGTATAAAATTATATTGCGAG  >  NC_007793/1957852‑1958013                                                                                       |                                                                            cGCATGTACTTCGTTTTACTGTCCACGCATGGTCGTTGACTTATTTATATTATAATATAAATATTTTATTTTTCAATACTTAATTTTAAAAATCCCCTAt                                                                <  1:2087998/100‑1 (MQ=255)         cTTCGTTTTACTGTCCACGCATGGTCGTTGACTTATTTATATTATAATATAAATATTTTATTTTTCAATACTTAATTTTAAAAATCCCCTATGAAAATGt                                                        <  1:2866416/100‑1 (MQ=255)           tCGTTTTACTGTCCACGCATGGTCGTTGACTTATTTATATTATAATATAAATATTTTATTTTTCAATACTTAATTTTAAAAATCCCCTATGAAAATGTtg                                                      <  1:2065167/100‑1 (MQ=255)             gTTTTACTGTCCACGCATGGTCGTTGACTTATTTATATTATAATATAAATATTTTATTTTTCAATACTTAATTTTAAAAATCCCCTATGAAAATGTtgat                                                    <  1:682208/100‑1 (MQ=255)             gTTTTACTGTCCACGCATGGTCGTTGACTTATTTATATTATAATATAAATATTTTATTTTTCAATACTTAATTTTAAAAATCCCCTATGAAAATGTtgag                                                    <  1:1411651/100‑2 (MQ=255)              ttttACTGTCCACGCATGGTCGTTGACTTATTTATATTATAATATAAATATTTTATTTTTCAATACTTAATTTTAAAAATCCCCTATGAAAATGTtgatg                                                   <  1:4985798/100‑1 (MQ=255)                                                               attttattttTCAATACTTAATTTTAAAAATCCCCTATGAAAATGTTGATGAGCTACATCTTTAAATCTTATTGTACATTGTATAAAATTATATTGCggc  <  1:4286931/100‑3 (MQ=255)                                                                                       |                                                                            CGCATGTACTTCGTTTTACTGTCCACGCATGGTCGTTGACTTATTTATATTATAATATAAATATTTTATTTTTCAATACTTAATTTCAAAAATCCCCTATGAAAATGTTGATGAGCTACATCTTTAAATCTTATTATACATTGTATAAAATTATATTGCGAG  >  NC_007793/1957852‑1958013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑