| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 613,711 | Δ1 bp | coding (2565/2844 nt) | SAUSA300_RS02915 → | serine‑aspartate repeat‑containing protein C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 613,711 | 0 | C | . | 90.6% | 36.8 / 6.9 | 32 | coding (2565/2844 nt) | SAUSA300_RS02915 | serine‑aspartate repeat‑containing protein C |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base . (29/0); total (31/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.38e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.47e-01 | |||||||||||
CAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGA > NC_007793/613617‑613776 | cagactcagacAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGa > 1:5238825/1‑100 (MQ=255) accagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACCCAGA‑TCGGaagagc > 1:4478747/3‑95 (MQ=14) ccagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagca > 1:261691/2‑94 (MQ=14) cagatAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGACAGCGACCCAGA‑TCGGaagagcac > 1:5347175/1‑93 (MQ=14) cagatAGCGACTCAGACTCGGATAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcac > 1:5208188/1‑93 (MQ=11) cagacagcgactcagactcagacagcgactcagactCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGTGACCCAGA‑TCGGaagagcac > 1:2882640/1‑93 (MQ=11) cagacAGTGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACCCAGA‑TCGGaagagcac > 1:948703/1‑93 (MQ=14) cagacAGTGATTCAGATTCAGACAGCAACTCAGACTCGGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCCGA‑TCGGaagagcac > 1:413798/1‑93 (MQ=14) cagacAGTGATTCAGATCCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCga > 1:4851927/1‑100 (MQ=255) cagacAGTGACTCGGACTCAGACAGTGATTCAGACTCAGATAGCGATTCAGACTCAGATAGCGATTCAGACTCAGACAGTGATTCAGA‑TCGGaagagcac > 1:3412777/1‑93 (MQ=17) cagacAGTGACTCGGACTCAGACAGGGATTCAGACTCAGATAGCGATTCAGACTCAGATAGCGATTCAGACTCAGACAGCAATTCAGA‑TCGGaagagcac > 1:2516278/1‑93 (MQ=17) cagacAGCGATTCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGCGATTCAGA‑TCGGaagagcac > 1:1578798/1‑93 (MQ=17) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:1411128/1‑93 (MQ=11) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGA‑TCGGaagagcac > 1:4812612/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGGGACTCAGA‑TCGGaagagcac > 1:3972907/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGA‑TCGGaagagcac > 1:3111460/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGAGACTCAGA‑TCGGaagagcac > 1:1240805/1‑93 (MQ=14) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGAGACAGA‑TCGGaagagcac > 1:4105676/1‑93 (MQ=11) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACCCAGA‑TCGGaagagcac > 1:4890014/1‑93 (MQ=11) cagacAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCAACTCAGA‑TCGGaagagcac > 1:4260720/1‑93 (MQ=11) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGTGACTCAGA‑TCGGaagagcac > 1:1960736/1‑93 (MQ=14) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGTGACGCAGA‑TCGGaagagcac > 1:31404/1‑93 (MQ=14) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCAACTCAGA‑TCGGaagagcac > 1:10386/1‑93 (MQ=14) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGAGACTCAGA‑TCGGaagagcac > 1:3023775/1‑93 (MQ=14) cagacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGAAACACAGA‑TCGGaagagcac > 1:126450/1‑93 (MQ=14) cagacAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGA‑TCGGaagagcac > 1:38970/1‑93 (MQ=14) cagacAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGACAGCAACCCAGA‑TCGGaagagcac > 1:47982/1‑93 (MQ=14) tgacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGC‑ACTCAGA‑TCGGaagagcacac > 1:490586/2‑91 (MQ=14) tgacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGAGACTCAGA‑TCGGaagagcaca > 1:2776441/2‑92 (MQ=14) tgacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGAGACTCAGA‑TCGGaagagcaca > 1:1650232/2‑92 (MQ=14) agacAGTGACTCGGACTCAGACAGTGATTCAGACTCAGATAGCGATTCAGACTCAGATAGCGATTCAGACTCAGACAGCGACGCAGA‑TCGGaagagcaca > 1:1888428/1‑92 (MQ=17) agacAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCG‑CTCAGA‑TCGGaagagcacac > 1:3610760/1‑91 (MQ=14) acAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGCCTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCgattc < 1:2036695/100‑1 (MQ=255) acAGCGACTCAGACTCGGATAGCGATTCAGATTCAGATAGCGATTCGGATTCAGACAGTGATTCAGATTCAGACAGCGACCCAGA‑TCGGaagagcacacg > 1:4274539/1‑90 (MQ=14) cagatagcgactcagactcagatagcgactcagactcGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGa > 1:4674434/1‑100 (MQ=255) | CAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAACGA > NC_007793/613617‑613776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |