Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 593,859 Δ1 bp coding (27/472 nt) SAUSA300_RS02840 → 30S ribosomal protein S7

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_007793593,8590T.99.9% 11964.3 / ‑3.5 2947coding (27/472 nt)SAUSA300_RS0284030S ribosomal protein S7
Reads supporting (aligned to +/- strand):  ref base T (1/0);  major base . (2912/31);  minor base G (2/0);  total (2916/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01

Only 100 of 2952 total aligned reads displayed.

ACTAAGAATTTAGTTTTTAATTAAATCTTAAACTTAAAATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAATAAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGCACAA  >  NC_007793/593763‑593953
                                                                                                |                                                                                               
   aaGAATTTAGTTTTTAATTAAATCTTAAACTTAAAATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGAc                                                                                          >  1:1143387/1‑100 (MQ=255)
                            taaacttaaaATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAAct                                                                 >  1:1951860/1‑100 (MQ=255)
                            taaacttaaaATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAAct                                                                 >  1:3535844/1‑100 (MQ=255)
                                               ataAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTTTAAGTTAGTAACTAaatt                                              >  1:3124331/1‑100 (MQ=255)
                                               ataAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatt                                              >  1:1565180/1‑100 (MQ=255)
                                                taAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatta                                             >  1:705472/1‑100 (MQ=255)
                                                ctaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatta                                             >  1:5423891/3‑100 (MQ=255)
                                                 tgggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                            >  1:4645434/3‑100 (MQ=255)
                                                 agcccaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                            >  1:4723482/6‑100 (MQ=255)
                                                 aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                            >  1:4054516/1‑100 (MQ=255)
                                                 aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                            >  1:2668859/1‑100 (MQ=255)
                                                 aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                            >  1:262321/1‑100 (MQ=255)
                                                 aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                            >  1:2203087/1‑100 (MQ=255)
                                                   tttaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaatt                                          >  1:32655/4‑100 (MQ=255)
                                                    tgaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                         >  1:3471552/3‑100 (MQ=255)
                                                    tcaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                         >  1:2445237/3‑100 (MQ=255)
                                                    ataggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                         >  1:1992303/3‑100 (MQ=255)
                                                    ataggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                         >  1:1052017/3‑100 (MQ=255)
                                                     caggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAGCTAAAttaattaa                                        >  1:1239742/2‑100 (MQ=255)
                                                     aaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAAttaattaa                                        >  1:2129886/1‑100 (MQ=255)
                                                      aggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAAc                                       >  1:1289860/1‑100 (MQ=255)
                                                               ttACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATg                              >  1:5271743/1‑100 (MQ=255)
                                                                tACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGt                             >  1:1000025/1‑100 (MQ=255)
                                                                 aCATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGtt                            >  1:5121908/1‑100 (MQ=255)
                                                                   tatATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAg                          >  1:1094202/3‑100 (MQ=255)
                                                                    ttATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGa                         >  1:2532403/1‑100 (MQ=255)
                                                                    ttATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGa                         >  1:3220289/1‑100 (MQ=255)
                                                                    ctATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAgg                         >  1:2854361/2‑99 (MQ=255)
                                                                     tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCGGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                        >  1:5371551/1‑100 (MQ=255)
                                                                     tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAGAATTATGTTAGAt                        >  1:4258763/1‑100 (MQ=255)
                                                                     tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGac                        >  1:603500/1‑99 (MQ=255)
                                                                     tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                        >  1:119279/1‑100 (MQ=255)
                                                                     tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                        >  1:4357387/1‑100 (MQ=255)
                                                                     tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                        >  1:1909918/1‑100 (MQ=255)
                                                                     tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                        >  1:486717/1‑100 (MQ=255)
                                                                     caTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                        >  1:39411/2‑100 (MQ=255)
                                                                     caTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                        >  1:3849203/2‑100 (MQ=255)
                                                                      ttGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGGTg                       >  1:2087032/2‑100 (MQ=255)
                                                                      ctGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:3584294/2‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacg                       >  1:4914048/1‑98 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacg                       >  1:3043026/1‑98 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacg                       >  1:2485648/1‑98 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGaag                       >  1:2037801/1‑98 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGTTg                       >  1:5179496/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:307901/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:2263144/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:1803308/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:5318793/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:2309566/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:2356974/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:4305997/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:2393259/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:558968/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:2729475/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:1753257/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:1511375/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:2989366/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:3363445/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                       >  1:3638306/1‑100 (MQ=255)
                                                                      aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATAATGTTAGAtc                       >  1:84750/1‑99 (MQ=255)
                                                                       ggCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATgg                      >  1:5017822/2‑100 (MQ=255)
                                                                       ccccTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATgg                      >  1:3404573/3‑100 (MQ=255)
                                                                        gCCTCGTAAAGGATCAGTGCCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGt                     >  1:4091804/1‑100 (MQ=255)
                                                                        gCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacgct                     >  1:4972038/1‑96 (MQ=255)
                                                                        gCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGt                     >  1:3741937/1‑100 (MQ=255)
                                                                        gCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGt                     >  1:4433591/1‑100 (MQ=255)
                                                                        gCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGACGGt                     >  1:5059542/1‑100 (MQ=255)
                                                                        gCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGACGGt                     >  1:1852013/1‑100 (MQ=255)
                                                                         ccTCGTAAAGGATCAATACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATCATGTTAGAtcgga                    >  1:5474936/1‑96 (MQ=255)
                                                                            cGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAAc                 >  1:279673/1‑100 (MQ=255)
                                                                            cGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAAc                 >  1:5221983/1‑100 (MQ=255)
                                                                            cGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAAc                 >  1:3167169/1‑100 (MQ=255)
                                                                            cGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAAc                 >  1:3306427/1‑100 (MQ=255)
                                                                            cGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGCaaga                 >  1:2577281/1‑98 (MQ=255)
                                                                                     ccAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAg       >  1:3689196/2‑100 (MQ=255)
                                                                                     acAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAg       >  1:666375/2‑100 (MQ=255)
                                                                                      taGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:4788406/2‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGGCGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:1663499/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAGTTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:458801/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATTTTAGATGGTAAACGT‑GGAACAGc      >  1:169973/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAAGAGc      >  1:1451066/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACaac      >  1:755234/1‑98 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:953752/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:3985008/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:1621473/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:2932443/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:1400823/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:1344234/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:4485534/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:4676066/1‑100 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGCAAAcagatcggaag       >  1:4541833/1‑90 (MQ=255)
                                                                                      cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGAAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGc      >  1:4188205/1‑100 (MQ=255)
                                                                                       ggTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGca     >  1:4402005/2‑100 (MQ=255)
                                                                                       aGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGca     >  1:3792162/1‑100 (MQ=255)
                                                                                       aGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGca     >  1:901447/1‑100 (MQ=255)
                                                                                        gTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGcac    >  1:41458/1‑100 (MQ=255)
                                                                                        gTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGcac    >  1:3887812/1‑100 (MQ=255)
                                                                                        gTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGcac    >  1:794611/1‑100 (MQ=255)
                                                                                         tACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGcaca   >  1:551545/1‑100 (MQ=255)
                                                                                          aCCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTGAAGATCGGAAGAGcaca   >  1:4825977/1‑100 (MQ=255)
                                                                                                |                                                                                               
ACTAAGAATTTAGTTTTTAATTAAATCTTAAACTTAAAATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAATAAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGT‑GGAACAGCACAA  >  NC_007793/593763‑593953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑