| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,152,543 | 2 bp→GT | intergenic (‑36/+112) | SAUSA300_RS10965 ← / ← SAUSA300_RS10970 | sucrose‑6‑phosphate hydrolase/LacI family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,152,543 | 0 | A | G | 100.0% | 27.5 / NA | 13 | intergenic (‑36/+113) | SAUSA300_RS10965/SAUSA300_RS10970 | sucrose‑6‑phosphate hydrolase/LacI family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (1/12); total (1/12) | |||||||||||
| * | NC_007793 | 2,152,544 | 0 | A | T | 92.3% | 27.4 / ‑3.6 | 13 | intergenic (‑37/+112) | SAUSA300_RS10965/SAUSA300_RS10970 | sucrose‑6‑phosphate hydrolase/LacI family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base T (1/11); total (1/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-01 | |||||||||||
TGATAACGTTCTTCTCTAGTCCATTCGGTCATAATATTTACCCAGTCCTCCTTTTATAATTTATGCTAATAACAATTTATATTCTATTATAGCAAATTTTACCTACGTTCTTTAACTTTTAACCTATCCATTTATAGTTATATGGTATCGGTTCCACA > NC_007793/2152476‑2152633 || tGATAACGTTCTTCTCTAGTCCATTCGGTCATAATATTTACCCATTCCTCCTTTTATAATTTATGCTGTTAACCATTTATATTCTATTATAGCAAAtttt > 1:4330320/1‑100 (MQ=255) ttcttcTCTAGTCCATTCGGTCATAATATTTACCCAGTCCTCCTTTTATAATTTATGCTGTTAACAATTTATATTCTATTATAGCAAATTTTACCTACGt < 1:1745579/100‑1 (MQ=255) ccgatctcTAGTCCATTCGGTCATAATATTTACCCAGTCCTCCTTTTATAATTTATGCTGTTAACAATTTATATTCTATTATAGCAAATTTTACCTACGt < 1:1791812/96‑1 (MQ=255) gatctAGTCCTTTCGGTCATAATATTTACCCAGTCCTCCTTTTATAATTTATGCTGTTAACAATTTATATTCTATTATAGCAAATTTTACCTACGtggct < 1:4615760/98‑5 (MQ=255) ctctAGTCCATTCGGTCATAATATTTACCCAGTCCTCCTTTTATAATTTATGCTGTTAACAATTTATATTCTATTATAGCAAATTTTTCCTACGTTCttt < 1:5002177/100‑1 (MQ=255) atctAGTTCATTCGGTCATAATATTTACCCAGTCCTCCTTTTATAATTTATGCTGTTAACAATTTATATTCTATTATAGCAAATTTTACCTACGTTCttt < 1:3024727/99‑1 (MQ=255) ccgttCGGTCATAATATTTACCCAGTCCTCCTTTTATAATTTATGCTGTTAACAATTTATATTCTATTATAGCAAATTTTACCTACGTTCTTTAACtttt < 1:5700833/97‑1 (MQ=255) cGGTCATAATATTTACCCAGTCCTCCTTTTATAATTTATGCTGTTAACAATTTATATTCTATTATAGCGAATTTTACCTACGTTCTTTAACTTTTAACCt < 1:2822753/100‑1 (MQ=255) ggTCATAATATTTACCCAGTCCTCCTTTTATAATTTATGCTGTTAACAATTTATATTCTATTATAGCAAATTTTACCTACGTTCTTTAACTTTTAACCTa < 1:5162207/100‑1 (MQ=255) aataTTTACCCAGTCCTCCTTTTATAATTTATGCTGTTAACAATTTATATTCTATTATAGCAAATTTTACCTACGTTCTTTAACTTTTAACCTATCCAtt < 1:3806126/100‑1 (MQ=255) gTCCTCCTTTTATAATTTATGCTGTTAACAATTTATATTCTATTATAGCAAATTTTACCTACGTTCTTTAACTTTTAACCTATCCATTTATAGTTATATg < 1:3503849/100‑1 (MQ=255) aTTTATGCTGTTAACAATTTATATTCTATTATAGCAAATTTTACCTACGTTCTTTAACTTTTAACCTATCCATTTATAGTTATATGGTATCGGTTCcaca < 1:5208979/100‑1 (MQ=255) aTTTATGCTGATAACAATTTATATTCTATTATAGCAAATTTTACCTACGTTCTTTAACTTTTAACCTATCCATTTATAGTTATATGGTATCGGTTCcagg < 1:2288300/100‑3 (MQ=255) || TGATAACGTTCTTCTCTAGTCCATTCGGTCATAATATTTACCCAGTCCTCCTTTTATAATTTATGCTAATAACAATTTATATTCTATTATAGCAAATTTTACCTACGTTCTTTAACTTTTAACCTATCCATTTATAGTTATATGGTATCGGTTCCACA > NC_007793/2152476‑2152633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |