| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,120,681 | 2 bp→AA | coding (11‑12/162 nt) | SAUSA300_RS10770 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,120,681 | 0 | T | A | 100.0% | 13.4 / NA | 7 | T4T (ACA→ACT) | SAUSA300_RS10770 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (6/1); total (6/1) | |||||||||||
| * | NC_007793 | 2,120,682 | 0 | G | A | 100.0% | 13.8 / NA | 7 | T4I (ACA→ATA) | SAUSA300_RS10770 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (6/1); total (6/1) | |||||||||||
CCACGCTGTAGTGAAGTACAGCAATGGCATAAGCACAATCGCTAAGACTGTGAAACATAGCACTGCTAATAGGTAGCTTTTATATGTGTCGCTCATTTTATTCTCTCCTTATATATTTCATTGAAATGCTCATCGACGAATTTATTCATCTTTCTTGCGTTAAATCTCCA > NC_007793/2120597‑2120766 || ccATGCAGTAGTGAAGTATAGAAACGGCATAAGTACAATTGCTAAGACTGTAAAGCACAGTACTGCTACTAGGTAGCTTTTATAAATGTTGCTCATTTTa > 1:3082779/1‑100 (MQ=255)ccATGCAGTAGTGAAGTATAGAAACGGCATAAGTACAATTGCTAAGACTGTAAAGCACAGTACTGCTACTAGGTAGCTTTTATAAATGTTGCTCATTTTa > 1:390789/1‑100 (MQ=255) gCTAAGACTGTAAAGCACAGTACTGCTACTAGGTAGCTTTTATAAATGTTGCTCATTTTATTCTCTCCTTATATATTTCATTGAAATGCTCATCGACGaa > 1:1255198/1‑100 (MQ=25) gCTAAGACTGTAAAGCACAGTACTGCTACTAGGTAGCTTTTATAAATGTTGCTCATTTTATTCTCTCCTTATATATTTCATTGAAATGCTCATCGACGaa > 1:5866592/1‑100 (MQ=25) ctgcagtaCTGCTACTAGGTAGCTTTTATAAATGTTGCTCATTTTATTCTCTCCTTATATATTTCATTGAAATGCTCATCGACGAATTTATTCAtctttc > 1:5309111/8‑100 (MQ=255) aCTGCTACTAGGTAGCTTTTATAAATGTTGCTCATTTTATTCTCTCCTTATATATTTCATTGAAATGCTCATCGACGAATTTATTCATCTTTCTTGCGtt < 1:101600/100‑1 (MQ=255) aGGTAGCTTTTATAAATGTTGCTCATTTTATTCTCTCCTTATATATTTCATTGAAATGCTCATCGACGAATTTATTCATCTTTCTTGCGTTAAATCTCCa > 1:4994069/1‑100 (MQ=255) || CCACGCTGTAGTGAAGTACAGCAATGGCATAAGCACAATCGCTAAGACTGTGAAACATAGCACTGCTAATAGGTAGCTTTTATATGTGTCGCTCATTTTATTCTCTCCTTATATATTTCATTGAAATGCTCATCGACGAATTTATTCATCTTTCTTGCGTTAAATCTCCA > NC_007793/2120597‑2120766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |