| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,590,662 | 2 bp→TT | intergenic (‑55/‑70) | SAUSA300_RS07850 ← / → SAUSA300_RS07855 | hypothetical protein/integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,590,662 | 0 | A | T | 100.0% | 41.7 / NA | 16 | intergenic (‑55/‑71) | SAUSA300_RS07850/SAUSA300_RS07855 | hypothetical protein/integrase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (14/2); total (14/2) | |||||||||||
| * | NC_007793 | 1,590,663 | 0 | C | T | 100.0% | 39.8 / NA | 16 | intergenic (‑56/‑70) | SAUSA300_RS07850/SAUSA300_RS07855 | hypothetical protein/integrase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (14/2); total (14/2) | |||||||||||
AAACTCCTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACACATTTAGTACCTAGTACTAAATTACGGGTAGCCCGACTACCCTTATTATTTTTTAATATTTTAT > NC_007793/1590568‑1590702 || aaaCTCCTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGt < 1:3017297/100‑1 (MQ=255) gcccTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGc > 1:1488010/3‑100 (MQ=255) ccTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGccc > 1:2009370/1‑100 (MQ=255) ccTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGccc > 1:2661552/1‑100 (MQ=255) ccTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGccc > 1:6051966/1‑100 (MQ=255) ccTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGccc > 1:79409/1‑100 (MQ=255) gTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCgcc > 1:1585598/1‑98 (MQ=255) cccagaagaagCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCgcc > 1:5599681/4‑98 (MQ=255) agaagCGCCCCTAGAAATTGAGTCATCTTATCAACTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCGCCTACCCt > 1:3836803/1‑100 (MQ=255) cgcgcCCCTAGAAATTGAGTCATCTTACCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCGCCTACCCttat > 1:6396978/2‑100 (MQ=255) ggcCCCTAGAAATTGAGTCATCTTATCACCTACCTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCGCCTACCCttatta > 1:1405445/2‑100 (MQ=255) agcCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCGCCTACCCttatta > 1:1532255/2‑100 (MQ=255) gcCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCGCCTACCCTtattat > 1:107435/1‑100 (MQ=255) gcCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCGCCTACCCTtattat > 1:3338856/1‑100 (MQ=255) aGTCATCTTATCACCTACTTTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCGCCTACCCTTATTAttttttgccaattct > 1:3270340/1‑91 (MQ=25) gTCATCTTATCACCTACATTTTATTTTATTATAACATATTTAGTACCTAGTACTAAATTTTGGGTAGCCCGCCTACCCTTATTAttttttgccaattttg < 1:4430410/100‑11 (MQ=21) || AAACTCCTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTATAACACATTTAGTACCTAGTACTAAATTACGGGTAGCCCGACTACCCTTATTATTTTTTAATATTTTAT > NC_007793/1590568‑1590702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |