| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,589,875 | 2 bp→CG | coding (5‑6/126 nt) | SAUSA300_RS07845 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,589,875 | 0 | T | C | 100.0% | 97.6 / NA | 40 | V2A (GTA→GCA) | SAUSA300_RS07845 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/3); total (37/3) | |||||||||||
| * | NC_007793 | 1,589,876 | 0 | A | G | 97.5% | 95.7 / ‑4.7 | 40 | V2V (GTA→GTG) | SAUSA300_RS07845 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (37/2); total (37/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.50e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.42e-01 | |||||||||||
AAAAAAATCAAAAAACGCCTACTAGTGTAGACGTTGAATGGTGGTGAGAATTTTATGGTAGATAAAAACAAAAAACAAGAAACTACTCGTAGTAACCCATTAAACAAAAGTTTTGAAAAGTCAGGCGCCAGCGAAAAATTAAAAAGCACTTTATC > NC_007793/1589817‑1589971 || ttactaaTCAAAAAACGCCTACAAGTGTAGACGTTGAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCaa > 1:2422635/6‑99 (MQ=21) aaTCAAAAAACGCCTACAAGTGTAGACGTTGAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAAc > 1:3584357/1‑100 (MQ=25) tacaaGTGTAGACGTTGAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGaaaa > 1:2046978/1‑100 (MQ=38) acaaGTGTAGACGTTGAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACCAAAGTTTTGAAAAg > 1:4948690/4‑100 (MQ=38) caaGTGTAGACGTTGAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAgc > 1:3996684/3‑99 (MQ=38) aaaGTGTAGACGTTGAATGGTGGTGAGAATTTTATGGCGGATAAAAAAAAAAAACAAGAAGCTACTCGTAGGAACCCAATAAACAAAAGTTTTGAAAAgc > 1:298778/3‑99 (MQ=38) tgtAGACGTTGAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAAAAAAAGTTTTGCAAAgccggg > 1:3375461/1‑95 (MQ=255) cgtAGACGTTGAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAgccggg > 1:4670977/2‑95 (MQ=255) tccgatctggtggTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAg < 1:4220980/93‑1 (MQ=255) ctGAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCg > 1:3347942/2‑100 (MQ=255) ccgatctgtggtgAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTGGAAAAGCCGGGTGCCAGCg < 1:3142452/93‑1 (MQ=255) tGAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGa > 1:1680375/1‑100 (MQ=255) tGAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAAACCAATAAACAAAAGTTTTGAAAAGCCGGGCGCCAGCGa > 1:1104808/1‑100 (MQ=255) gAATGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGaa > 1:5777351/1‑100 (MQ=255) tctggtggTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGaaa > 1:3452206/3‑100 (MQ=255) taTGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGaaa > 1:5444817/2‑100 (MQ=255) gctggtggTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGGGCCAGCGaaa > 1:3312694/3‑100 (MQ=255) gaTGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTATTTGTAGCAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGaag > 1:953029/2‑99 (MQ=255) aaTGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGGGCCAGCGaaa > 1:828730/1‑100 (MQ=255) aaTGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGGAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGaaa > 1:3914006/1‑100 (MQ=255) ttggtggTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAGAGCCGGGTGCCAGCGaaaa > 1:2617275/2‑100 (MQ=255) aTGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGaaaa > 1:4588470/1‑100 (MQ=255) aTGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGGGCCAGCGaaaa > 1:4740688/1‑100 (MQ=255) aTGGTGGTGAGAATTTTATGGCGGATAAAAACAAAAAACAAAAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGaaaa > 1:626814/1‑100 (MQ=255) gtgtggtgAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGGGCCAGCGaaaac > 1:2295226/3‑99 (MQ=255) gcctggtgAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGGGCCAGCGaaaac > 1:2287713/4‑99 (MQ=255) ctgtggtgAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAACTACTCGTAATAACCCAATAAACAAAAGCTTTGAAAAACCGGGGGGCAGCGaagat > 1:445744/3‑97 (MQ=255) acatggtgAGAATTTTATGGCGGATAAAAACAAAAAACAAGGAACTACTTGTAGTAAACCAATAAACAAAAGGGTTGAAAAGCCGGGGGCCAGCGgaaac > 1:6321703/4‑99 (MQ=255) ggtggtGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTTAAAAGCCGGGTGCCAGCGaaaact > 1:5815377/1‑98 (MQ=255) ggtggtGAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGCAGTAACCCAATAAACAAAAGCTTTGAAAAGCCGGGTGCCAGCGaaaact > 1:5568292/1‑98 (MQ=255) gtggtgAGAATTTTATGGCGGATAAAAACAAAAAACAAGGAGCCACTCGTAGTAATCCAATAAACAAAAGCTTTGAAAAGCCCGGCGCCAgatcggaaga > 1:496662/1‑91 (MQ=255) gtggtgAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAAACCAATAAACAAAAGCTTTGAAAAGCCGGGTGCCAGCGAAAACtt > 1:2350372/1‑100 (MQ=255) gtggtgAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGATACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGAGCCAGCGAAAACtt > 1:4786197/1‑100 (MQ=255) ggtgAGAATTTTATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGAAACCCAATAAACAAAAGTTTTGAAAAGCCGGGGGCCAGCGAAAACTTaa > 1:5107228/1‑100 (MQ=255) ggtgAGAATTTTATGGCGGATAAAAACAAAAAACAAGAACCTCCTCGTTGTAACCCCATTAACAAAAGTTTTGAAAAGCCGGGAGCCAGCGAAAACTTaa > 1:3111504/1‑100 (MQ=255) ttATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGGGCCAGCGAAAACTTAAAAAGCACttt > 1:3428327/1‑100 (MQ=255) ctATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGAAAACTTAAAAAGCACttt > 1:3021768/2‑100 (MQ=255) tATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGAAAACTTAAAAAGCACTTTa > 1:4147905/1‑100 (MQ=255) tATGGCGGATAAAAACAAAAAACAAGAAGCTACTCGCAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGAAAACTTAAAAAGCACTTTa > 1:4847659/1‑100 (MQ=255) tGGCAGATAAAAACAAAAAACAAGAAGCTACTCGTAGTAACCCAATAAACAAAAGTTTTGAAAAGCCGGGTGCCAGCGAAAACTTAAAAAGCACTTTATc < 1:1395034/100‑1 (MQ=255) || AAAAAAATCAAAAAACGCCTACTAGTGTAGACGTTGAATGGTGGTGAGAATTTTATGGTAGATAAAAACAAAAAACAAGAAACTACTCGTAGTAACCCATTAAACAAAAGTTTTGAAAAGTCAGGCGCCAGCGAAAAATTAAAAAGCACTTTATC > NC_007793/1589817‑1589971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |