| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,580,299 | 2 bp→TA | coding (25‑26/243 nt) | SAUSA300_RS07740 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,580,299 | 0 | C | T | 100.0% | 10.3 / NA | 9 | R9H (CGC→CAC) | SAUSA300_RS07740 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/9); total (0/9) | |||||||||||
| * | NC_007793 | 1,580,300 | 0 | G | A | 100.0% | 10.1 / NA | 9 | R9C (CGC→TGC) | SAUSA300_RS07740 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (0/9); total (0/9) | |||||||||||
GTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGTGCGCTATCTGTCATGGTCGTCACTCCTTTTAACAATTAGGCAGTCCAAA > NC_007793/1580211‑1580359 || gTAATAAGTGTCATTTAATACATGGATATGTGCCACTCGCTCGTTATTCTGATACAGATATCTCTTAGAACCGAAAAATTGGTTTAAGTATTCTTTACgg < 1:6414665/100‑2 (MQ=11) aaatgtcATTCACTACATGGATATGTGCCACTCGTTCGTTATCCCGATACAGATATCTCTTAGATCCGAAAAATTGATTTAAGTATTCTTtgcgtgcgtt < 1:3572511/94‑3 (MQ=14) aaatgtcATTCACTACATGGATATGTGCCACTCGTTCGTTATCCCGATACAGATATCTCTTAGATCCGAAAAATTGATTTAAGTATTCTTtgcgtgcgtt < 1:6077066/94‑3 (MQ=14) aatacATGGATATGTGCCACTCGCTCGTTATTCTGATACAGATATCTCTTAGAACCGAAAAATTGGTTTAAGTATTCTTTACGTGCGCTATCTGTCATgt < 1:628996/98‑2 (MQ=11) aatacATGGATATGTGCCACTCGCTCGTTATTCTGATACAGATATCTCTTAGAACCGAAAAATTGGTTTAAGTATTCTTTACGTGCGCTATCTGTCATgc < 1:2715311/98‑2 (MQ=11) acATGGATATGTGCCACTCGCTCGTTATTCTGATACAGATATCTCTTAGAACCGAAAAATTGGTTTAAGTATTCTTTACGTGCGCTATCTGTCATgtcca < 1:5762924/100‑5 (MQ=11) cgttATCCCGATACAGATATCTCTTAGATCCGAAAAATTGATTTAAGTATTCTTTGCGTGCGTTATCTGTCATAGTCATCACTCCTTTTAACAATTAggt < 1:3963284/100‑2 (MQ=14) cgttATCCCGATACAGATATCTCTTAGATCCGAAAAATTGATTTAAGTATTCTTTGCGTGCGTTATCTGTCATAGTCATCACTCCTTTTAACAATTAggt < 1:791404/100‑2 (MQ=14) cgATACAGATATCTCTTAGATCCGAAAAATTGATTTAAGTATTCTTTGCGTGCGTTATCTGTCATAGTCATCACTCCTTTTAACAATTAGGCAGACCaag < 1:6578349/99‑2 (MQ=14) || GTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGTGCGCTATCTGTCATGGTCGTCACTCCTTTTAACAATTAGGCAGTCCAAA > NC_007793/1580211‑1580359 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |