| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,579,425 | 3 bp→TTG | coding (400‑402/537 nt) | SAUSA300_RS07730 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,579,425 | 0 | C | T | 100.0% | 38.2 / NA | 16 | L134L (TTG→TTA) | SAUSA300_RS07730 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (1/15); total (1/15) | |||||||||||
| * | NC_007793 | 1,579,426 | 0 | A | T | 100.0% | 41.5 / NA | 16 | L134* (TTG→TAG) | SAUSA300_RS07730 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (1/15); total (1/15) | |||||||||||
| * | NC_007793 | 1,579,427 | 0 | A | G | 100.0% | 32.3 / NA | 16 | L134L (TTG→CTG) | SAUSA300_RS07730 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (1/15); total (1/15) | |||||||||||
GATTCCTTTTCATTTTCTTTTTGTATGCGTCAATGAGCTGGTCGATAGAATATAAGTTGAAAGCTATGTCTATCGCTATTACAATTGCCAATTGGTCAGGATAAAATTCTTTGAATATTATCTGTGGTGTGCTAACAACTGCGTCTTGAGCAAATTCTTTATCTTTAAAAT > NC_007793/1579337‑1579507 ||| ggttCCTTTTCATTTTCTTTTTGTATGCGTCAATGAGTTGGTCGATAGAATATAAGTTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCggg < 1:487095/98‑1 (MQ=255) tCCTTTTCATTTTCTTTTTGTATGCGTCAATGAGTTGGTCGATAGAATATAAGTTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCggggat < 1:1151692/100‑4 (MQ=255) tCAATGAGTTGGTCGATAGAATATAAGTTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTgtggtg < 1:1467623/100‑1 (MQ=255) tCAATGAGTTGGTCGATAGAATATAAGTTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTgtggtg < 1:3404193/100‑1 (MQ=255) tCAATGAGTTGGTCGATAGAATATAAGTTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTgtggtg < 1:6186487/100‑1 (MQ=255) cAATGAGTTGGTCGATAGAATATAAGTTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTgtggtgc < 1:3122245/100‑2 (MQ=255) cAATGAGTTGGTCGATAGAATATAAGTTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTGTGgtgt < 1:339699/100‑1 (MQ=255) cAATGAGTTGGTCGATAGAATATAAGTTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTGTGgtgt < 1:4976794/100‑1 (MQ=255) cAATGAGTTGGTCGATAGAATATAAGGTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTGTGgtgt < 1:300032/100‑1 (MQ=255) cAATGAGTTGGTCGATAGAATATAAGATGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTGTGgtgt < 1:2504517/100‑1 (MQ=255) aTGAGTTGGTCGATAGAATATAAGTTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTGTGgtgtat < 1:4380195/100‑3 (MQ=255) aaTATAAGTTGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTGTGGTGTACTAACAACTGCGTCTTg < 1:3785607/100‑1 (MQ=255) ttGTAAGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTGTGGTGTACTAACAACTGCGTCTTGAGCAAAtt < 1:4064357/100‑1 (MQ=255) taaGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTGTGGTGTACTAACAACTGCGTCTTGAGCAAATtctt < 1:2282958/99‑1 (MQ=255) aaGCTATGTCTATCACTATAACAATTGCTTGTTGGTCGGGATAAAATTCTTTGAATATTATCTGTGGTGTACTAACAACTGCGTCTTGAGCAAATtcttt < 1:1415878/100‑1 (MQ=255) aTCACTATAACAATTGCTTGTTGGTCGGGTTAAAATTCTTTGAATATTATCTGTGGTGTACTAACAACTGCGTCTTGAGCAAATTCTTTATCTTTAAAAt > 1:1553790/1‑100 (MQ=255) ||| GATTCCTTTTCATTTTCTTTTTGTATGCGTCAATGAGCTGGTCGATAGAATATAAGTTGAAAGCTATGTCTATCGCTATTACAATTGCCAATTGGTCAGGATAAAATTCTTTGAATATTATCTGTGGTGTGCTAACAACTGCGTCTTGAGCAAATTCTTTATCTTTAAAAT > NC_007793/1579337‑1579507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |