| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 1,578,488 | 3 bp→CGT | coding (136‑138/387 nt) | SAUSA300_RS07710 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 1,578,488 | 0 | T | C | 100.0% | 11.6 / NA | 9 | L46L (TTA→TTG) | SAUSA300_RS07710 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (1/8); total (1/8) | |||||||||||
| * | NC_007793 | 1,578,489 | 0 | A | G | 100.0% | 10.9 / NA | 9 | L46S (TTA→TCA) | SAUSA300_RS07710 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (1/8); total (1/8) | |||||||||||
| * | NC_007793 | 1,578,490 | 0 | A | T | 100.0% | 11.7 / NA | 9 | L46I (TTA→ATA) | SAUSA300_RS07710 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (1/8); total (1/8) | |||||||||||
AATGACTTGTTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATAGTTCCTTGATGTAATTCTTTGTGTTGGTAACTAGCCACTGTATAGATAGGCAATGTGATAACAAGTAGCAATGCGAATATACCGAATAATGACAGTATT > NC_007793/1578401‑1578575 ||| ccgatcTTGTTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAAGTGTTCCTTGGTGCGTTTCTTTgtgt < 1:6490527/95‑1 (MQ=17) aCTTGCTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTGCGTTTCTTTGTGTTGGt < 1:4682882/100‑1 (MQ=17) aaTACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTGCGTTTCTTTGTGTTGGTAACTAGCCACTGtat < 1:1190554/100‑1 (MQ=14) aaTACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTGCGTTTCTTTGTGTTGGTAACTAGCCACTGtat < 1:6154367/100‑1 (MQ=14) aaTACAATATAAAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTGCGTTTCTTTGTGTTGGTAACTAGcctcgtata > 1:461009/1‑93 (MQ=14) aTACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTGCGTTTCTTTGTGTTGGTAACTAGCCACTGtata < 1:4351254/100‑1 (MQ=14) cttccgaTCTTGTCTCTTGTTATATTTATCTGTAATTGTTCCTTGGTGCGTTTCTTTGTGTTGGTAACTAGCCACTGTATAGATAGGAAATGTGacaaca < 1:3054264/94‑1 (MQ=11) tatTTATCTGTAATTGTTCCTTGGTGCGTTTCTTTGTGTTGGTAACTAGCCACTGTATAGATAGGAAATGTGACAACAAGTAACAATGCGAATATGCCgg < 1:3316740/100‑2 (MQ=14) tgTTCCTTGGTGCGTTTCTTTGTGTTGGTAACTAGCCACTGTATAGATAGGAAATGTGACAACAAGTAACAATGCGAATATGCCGAATAATGACAGTact < 1:5489666/99‑3 (MQ=14) ||| AATGACTTGTTTGTTGTCTAATACAATATAGAACTTGTCTTCTTTATCTTGTCTCTTGTTATATTTATCTGTAATAGTTCCTTGATGTAATTCTTTGTGTTGGTAACTAGCCACTGTATAGATAGGCAATGTGATAACAAGTAGCAATGCGAATATACCGAATAATGACAGTATT > NC_007793/1578401‑1578575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |