| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 895,527 | 2 bp→G | intergenic (‑398/‑635) | SAUSA300_RS04395 ← / → SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 895,527 | 0 | A | . | 100.0% | 106.7 / NA | 29 | intergenic (‑398/‑636) | SAUSA300_RS04395/SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (29/0); total (29/0) | |||||||||||
| * | NC_007793 | 895,528 | 0 | T | G | 100.0% | 71.6 / NA | 29 | intergenic (‑399/‑635) | SAUSA300_RS04395/SAUSA300_RS04400 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (29/0); total (29/0) | |||||||||||
TGTATATAGTAGGAGTGAACTATATAGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTCATATACATATATCTTGATAACATAGAGTTGTTATAGTCGCTACGCCACTCATACTAGTTACTGGGTGGTTGTT > NC_007793/895438‑895599 | ggtATATAGTAGGAGTGAACTATATAGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACatatat > 1:3052578/2‑100 (MQ=255) gtATATAGTAGGAGTGAACTATATAGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATc > 1:6621184/1‑100 (MQ=255) gtATATAGTAGGAGTGAACTATATAGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATc > 1:2737256/1‑100 (MQ=255) gtATATAGTAGGAGTGAACTATATAGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATc > 1:1229182/1‑100 (MQ=255) agtagGAGTGAACTATATAGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATa > 1:5487511/1‑100 (MQ=255) agtagGAGTGAACTATATAGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATa > 1:5858007/1‑100 (MQ=255) aGTGAACTATATAGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATCTCTTGATAACATag > 1:4941192/1‑100 (MQ=255) atataGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTAACAGGCGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTta > 1:2424902/1‑100 (MQ=255) ataGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTtaca > 1:5944585/1‑98 (MQ=255) taGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAg > 1:3651786/1‑100 (MQ=255) taGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAg > 1:3811494/1‑100 (MQ=255) aGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGt > 1:2001552/1‑100 (MQ=255) aGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGt > 1:2250582/1‑100 (MQ=255) gCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTCGTTACAgat > 1:239356/1‑98 (MQ=255) ccGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGc > 1:5382246/1‑100 (MQ=39) tgCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTa > 1:3799707/2‑100 (MQ=38) tgagGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTAcac > 1:4559055/2‑98 (MQ=38) ggCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTAcaccac > 1:588262/1‑100 (MQ=38) atCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTa > 1:3826145/1‑100 (MQ=38) ttGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTAGt > 1:756680/2‑100 (MQ=38) cTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTAGt > 1:3908686/1‑100 (MQ=38) cTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTAGt > 1:6419081/1‑100 (MQ=38) ggCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTAGTTa > 1:49241/1‑100 (MQ=38) ggCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTAGTTa > 1:2320566/1‑100 (MQ=38) cacaGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTAGTTACTGGGTGgttgt > 1:5210950/1‑100 (MQ=38) cacaGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTAGTTACTGGGTGgttgt > 1:4920394/1‑100 (MQ=38) cacaGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTAGTTACTGGGTGgttgt > 1:2657562/1‑100 (MQ=38) cacaGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTAGTTACTGGGTGgttgt > 1:6558881/1‑100 (MQ=38) ccaGGAGACATCTTCCTTGTCATCACTC‑GATACATATATCTTGATAACATAGAGTTGTTACAGTCGCTACACCACTCATACTAGTTACTGGGTGgttgtt > 1:1433381/2‑100 (MQ=38) | TGTATATAGTAGGAGTGAACTATATAGCCCGGCAGAGGCCATATATCTGGCTGTTGGTCTCACAGGAGACATCTTCCTTGTCATCACTCATATACATATATCTTGATAACATAGAGTTGTTATAGTCGCTACGCCACTCATACTAGTTACTGGGTGGTTGTT > NC_007793/895438‑895599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |