| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 656,344 | 2 bp→TT | coding (127‑128/630 nt) | SAUSA300_RS03115 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 656,344 | 0 | A | T | 100.0% | 46.3 / NA | 19 | N43Y (AAT→TAT) | SAUSA300_RS03115 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (8/11); total (8/11) | |||||||||||
| * | NC_007793 | 656,345 | 0 | A | T | 100.0% | 46.3 / NA | 19 | N43I (AAT→ATT) | SAUSA300_RS03115 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (8/11); total (8/11) | |||||||||||
AATATAGAATTATTAAATACAATAATGAATATTTCATGGTTGATTTAGTAAGTACTTGGATTGCTTATTTTTTGCCCATGATTAATTGGAATAGTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGCTAAAAATAATACTTTCTGGCCTGTTGC > NC_007793/656255‑656438 || aaTATAGAATTATTAAATACAATAATGAATATTTCATGGTTGATTTAGTAAGTACTTGGATTGCTTATTTTTTGCCCATGATTAATTGGTTTATTCCCaa < 1:5987822/100‑1 (MQ=255) atatAGAATTATTAAATACAATAATGAATATTTCATGGTTGATTTAGTAAGTACTTGGATTGCTTATTTTTTGCCCATGATTAATTGGTTTATTCCCaaa < 1:5643333/100‑1 (MQ=255) taAATACAATAATGAATATTTCATGGTTGATTTAGTAAGTACTTGGATTGCTTATTTTTTGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGaaa < 1:5477662/100‑1 (MQ=255) cAATAATGAATATTTCATGGTTGATTTAGTAAGTACTTGGATTGCTTATTTTTTGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAAATtagt < 1:445919/100‑1 (MQ=255) aataatGAATATTTCATGGTTGATTTAGTAAGTACTTGGATTGCTTATTTTTTGCCCATGATTAATTGGTTTATTCCC‑AAAAGTACGCGAAAATcagcag < 1:414970/100‑1 (MQ=14) cATGGTTGATTTAGTAAGTACTTGGATTGCTTATTTTTTGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAgaagagaagatcggaag > 1:6110729/1‑93 (MQ=17) cATGGTTGATTTAGTAAGTACTTGGATTGCTTATTTTTTGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGaa < 1:3198990/100‑1 (MQ=255) aagtaCTTGGATTGCTTATTTTTTGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTc > 1:2054448/1‑100 (MQ=255) aagtaCTTGGATTGCTTATTTTTTGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTc > 1:3651293/1‑100 (MQ=255) gATTGCTTATTTTTTGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGca < 1:5127092/100‑2 (MQ=255) gATTGCTTATTTTTCGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGCt < 1:4894662/100‑1 (MQ=25) gCTTATTTTTTGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGCTaaaa > 1:1575939/1‑100 (MQ=255) aTTTTTTGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAACTTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGCTAAAaataa > 1:6211251/1‑100 (MQ=37) ttGCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGCTAAAAATAATACtt > 1:4785839/1‑100 (MQ=255) tGCCCATGATTAATTGGTTTATTCCCATAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAATGTTTAAATATTGTCAAACCCGTTAAAAATAATACttt > 1:2840561/1‑100 (MQ=25) gCCCATGATTAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGCTAAAAATAATACTTTc > 1:1141709/1‑100 (MQ=255) tAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGCTAAAAATAATACTTTCTGGCCTGtt < 1:5845160/100‑1 (MQ=255) tAATTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGCTAAAAATAATACTTTCTGGCCTGta < 1:2212307/100‑2 (MQ=255) aTTGGTTTATTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGCTAAAAATAATACTTTCTGGCCTGTTGc < 1:1784079/100‑1 (MQ=255) || AATATAGAATTATTAAATACAATAATGAATATTTCATGGTTGATTTAGTAAGTACTTGGATTGCTTATTTTTTGCCCATGATTAATTGGAATAGTCCCAAAAAGTACGCGAAAATTAGTAGAGAAGAATTTGAAAGTTTAAATATTGTCAAACCCGCTAAAAATAATACTTTCTGGCCTGTTGC > NC_007793/656255‑656438 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |