| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 621,817 | 2 bp→CG | coding (2922‑2923/3465 nt) | SAUSA300_RS02925 → | MSCRAMM family adhesin SdrE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 621,817 | 0 | T | C | 84.0% | 325.8 / 118.9 | 455 | D974D (GAT→GAC) | SAUSA300_RS02925 | MSCRAMM family adhesin SdrE |
| Reads supporting (aligned to +/- strand): ref base T (71/1); new base C (378/1); total (452/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.38e-01 | |||||||||||
| * | NC_007793 | 621,818 | 0 | T | G | 84.5% | 330.3 / 151.1 | 455 | S975A (TCA→GCA) | SAUSA300_RS02925 | MSCRAMM family adhesin SdrE |
| Reads supporting (aligned to +/- strand): ref base T (69/1); new base G (381/2); total (452/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.36e-05 | |||||||||||
Only 100 of 466 total aligned reads displayed.
AGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCAGATAGCG > NC_007793/621718‑621917 || cAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCATACAGCGACTCAGAGTCAGATAGCGACTCAGa > 1:4612507/1‑100 (MQ=255) gcagacagcgactcagacgcagatagcgattcagatgCGGACAGCAACTCAGACACAGACAGCGACTCAGCGGCAGATAGCGCATCTGAAGCGGACAGCg > 1:1395709/2‑100 (MQ=2) tcatgcggacagcgattcagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGTTGCGGACAGCGATTCAGACGCAGAt > 1:201544/8‑100 (MQ=0) ttatcccagcgattcagacgcagatagCGATTCTGATGCGCACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGc > 1:1004773/7‑100 (MQ=2) tgtggcagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgat > 1:3644317/6‑100 (MQ=2) tgactcagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgat > 1:3110989/2‑100 (MQ=2) ctcagacgcagatagCGATTCAGATTCAGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcg > 1:1159446/1‑97 (MQ=1) cagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcaga > 1:6085354/1‑100 (MQ=2) cagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcaga > 1:2595148/1‑100 (MQ=2) cagacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcaga > 1:4209105/1‑100 (MQ=2) ctatgcggacagcgattcagacgcagacagcgattcagacgcaGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGCttcagattcagac > 1:6427093/8‑99 (MQ=2) cgacgcagatagCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcggac > 1:2789454/2‑94 (MQ=0) agacgcagatagCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAAATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcggac > 1:4415301/1‑94 (MQ=0) agacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcagac > 1:4291587/1‑99 (MQ=2) gacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGCTtctgatgcagaca > 1:4880765/1‑98 (MQ=2) gacgcagatagCGACTCTGATGCGGACAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtctgatgcagaca > 1:6537472/1‑98 (MQ=2) cagcagatagCGATTCTGATGCAGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGACAGCGATTCAGACGCAGATAg > 1:4525817/4‑100 (MQ=2) acgcagatagCGATTCTGATGCAGACAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGACAGCGATTCAGACGCAGATAg > 1:290589/4‑100 (MQ=2) actaacgattcagatgcgGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGGTTCAGATAGCGAtt > 1:4910895/7‑100 (MQ=2) ctggcgactcagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtc > 1:2209503/9‑100 (MQ=11) aagcgactcagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGGTTCAGATAGCGATtct > 1:5554264/8‑99 (MQ=1) agcgattcagatgcgGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGCTTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctg > 1:5017585/4‑98 (MQ=0) agcgattcagatgcgGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctg > 1:3839523/4‑98 (MQ=1) caccccgattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacg > 1:3424424/7‑99 (MQ=11) atctcccgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGACtcagacgca > 1:2065965/9‑100 (MQ=0) tcagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCCGACGCAGATAGCGATTCAGATTCAGACAGCGACtcagatcgga > 1:6392637/1‑95 (MQ=11) gcagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCCGACGCAGATAGCGATTCTGATGCGGTCAGCGCGtcagacgcag > 1:584888/2‑100 (MQ=2) ccagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcag > 1:896986/2‑100 (MQ=11) ctgatgcggaCAGCGATTCAGACGCGGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:1772038/9‑100 (MQ=2) ctgatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATtcagacgcaga > 1:6345301/9‑100 (MQ=2) ctgatgcggaCAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGACtcagacgcaga > 1:5132070/9‑100 (MQ=2) ccgatgcggaCAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGATtctgacgcaga > 1:552400/9‑100 (MQ=0) cagattcagtCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATACAGACGCAGATAGCGATTCCGATTCAGATAGCGATtctgttgcgga > 1:3522333/1‑91 (MQ=2) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:2684762/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:2470961/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:1938930/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:5935270/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:4840381/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:77835/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:3619956/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:5049117/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcgga > 1:5409214/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGATtctgatgcgga > 1:3162683/1‑94 (MQ=11) cagattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATtcagacgcaga > 1:3725134/1‑100 (MQ=11) cagattcagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:3462201/1‑100 (MQ=11) cagatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:1046385/1‑100 (MQ=2) cagacgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:3781037/7‑100 (MQ=0) cagacgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcaga > 1:690033/7‑100 (MQ=0) tgatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATtcagacgcagat > 1:160848/8‑99 (MQ=2) tgatgcggaCAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGACtcagacgcagat > 1:2538333/8‑99 (MQ=2) tgatgcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcggac > 1:1636831/2‑93 (MQ=2) agattcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATtctgatgcggac > 1:838475/1‑93 (MQ=11) agacgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcagat > 1:170858/6‑99 (MQ=0) gatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATtcagtcgcagatc > 1:4093159/7‑98 (MQ=2) gatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATtcagacgcagata > 1:3243681/7‑98 (MQ=2) gatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATtcagacgcagata > 1:1884195/7‑98 (MQ=2) gatgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGAAAGCGATTCAGCTGCGGACAGCGATtcagacgcagata > 1:4216073/7‑98 (MQ=0) gatgcggaCAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcagata > 1:4006380/7‑98 (MQ=2) gatgcggaCAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGTTGCAGACAGCGACtcagacgcagata > 1:21010/7‑98 (MQ=2) gatgcggaCAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGCTGCAGACAGCGACtcagacgcagata > 1:5705656/7‑98 (MQ=2) gatgcggaCAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGACtcagacgcagata > 1:1345022/7‑98 (MQ=2) gatgcggaCAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGACtcagacgcagata > 1:5483763/7‑98 (MQ=2) cacgcagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGACAGCGACtcagacgcagatc > 1:6135782/5‑98 (MQ=1) ctccagaTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGATTCAGACGCAGACAg > 1:1235367/4‑100 (MQ=11) cggcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAg > 1:1416421/6‑100 (MQ=2) tgcggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGc > 1:4350715/5‑100 (MQ=2) tcagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg > 1:1533908/1‑100 (MQ=11) ccggaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGCTAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCg > 1:6192255/4‑100 (MQ=2) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGcag > 1:6007584/1‑98 (MQ=2) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:5639408/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:6616816/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:6473559/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:949588/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:1460514/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:4966323/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:4777095/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:1975272/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:2430916/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:4049541/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:3386532/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:3547800/1‑100 (MQ=11) cagaCAGCGATTCAGACGCAGATAGCGATTCTGATGCCGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCTGACAGCGa > 1:2288994/1‑100 (MQ=2) cagaCAGCGATTCAGACGCAGACAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCAGATGCGGACAGCGa > 1:1276792/1‑100 (MQ=11) cagaCAGCGATTAAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGa > 1:1132983/1‑100 (MQ=2) cagaCAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGAGAGCGACTCAGATCCAGATAGCGACTCAGACTCAGACAGCgc > 1:6268131/1‑99 (MQ=255) cagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGATTCAGACGCCGATAGCGa > 1:6040062/1‑100 (MQ=11) cagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGATTCAGACGCAGATAGCGa > 1:3066348/1‑100 (MQ=11) cagaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGAACAGCGa > 1:3009895/1‑100 (MQ=2) ggaCAGCGACTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGACTCAGACGCAGATAGcaat > 1:5323368/2‑97 (MQ=0) agaCAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcaaacgcagatcggaag > 1:380430/1‑93 (MQ=2) taCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGatt > 1:515262/2‑98 (MQ=2) gaCAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGatt > 1:411801/1‑98 (MQ=2) ctaGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCAATTCAGACGCAGATAGCGATTCTGATGCGGACCGCGATTCAGACGCAGATAGCGATtc > 1:3359630/3‑100 (MQ=2) ccAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCAGATGCAGATAGCGATTCTGATGCGGACAGCGATtc > 1:521078/2‑100 (MQ=2) ccAGCGACTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATtcagacgcagatgtcgattc > 1:2760218/2‑91 (MQ=2) ataGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGGGATtc < 1:3143623/98‑1 (MQ=2) taGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtca > 1:4694979/2‑100 (MQ=2) cAGCGATTCAGACGCAGATAGCGATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGATTCAGACGCAGATAGCGATtca > 1:5811473/1‑100 (MQ=2) aGCGATTCAGATTCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATtcag > 1:1252808/1‑100 (MQ=2) cagattcagatAGCGATTCTGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCGGACAGCGATTCAGACGCACACAGCGATtcagactcaga > 1:3888702/1‑100 (MQ=2) || AGACAGCGATTCAGACTCAGATAGTGACTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGATTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCAGATAGCG > NC_007793/621718‑621917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |