| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 521,750 | A→G | R141R (AGA→AGG) | SAUSA300_RS02475 → | DNA polymerase III subunit delta' |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 521,750 | 0 | A | G | 97.1% | 83.6 / ‑5.7 | 34 | R141R (AGA→AGG) | SAUSA300_RS02475 | DNA polymerase III subunit delta' |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (33/0); total (34/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGAAATTTCTTGAAGAACCACCGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGATGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAACAAAACATGTCTAAGCCAGTAGCTGAAATGATTAG > NC_007793/521662‑521845 | tGAAATTTCTTGAAGAACCACCGGACAGTACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGt > 1:4740987/1‑100 (MQ=255)tGAAATTTCTTGAAGAACCACCGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAgatcgg > 1:3817407/1‑95 (MQ=255) tGAAGAACCACCGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAg > 1:6035370/1‑100 (MQ=255) tGAAGAACCACCGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAg > 1:4577875/1‑100 (MQ=255) agaaCCACCGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGccg > 1:4416640/1‑99 (MQ=255) taccaccGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTAt > 1:2916846/2‑100 (MQ=255) caccaccGGACAATACGATTGCTATTTTATTGTCTACCAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTAt > 1:5798732/2‑100 (MQ=255) aaCCACCGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAACCTAt > 1:2916860/1‑100 (MQ=255) accaccGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGCCACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTAta > 1:1759416/1‑99 (MQ=255) ccaccGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTg > 1:5666075/1‑100 (MQ=255) gccGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGAt > 1:1957899/2‑100 (MQ=255) accGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGAt > 1:320581/1‑100 (MQ=255) aTTTTATTGTCT‑‑AAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGa > 1:4371927/1‑100 (MQ=255) ccTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGGGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGACTAGtca > 1:6374227/2‑98 (MQ=255) cTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGa > 1:1234924/1‑100 (MQ=255) gcAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAAc > 1:3390413/2‑100 (MQ=255) aCAAAACTTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAAc > 1:2204299/1‑100 (MQ=255) aCAAAACCTGAGCAAATTTTAGACTCAATCCATTCAAGATGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGACTCGCTGAAc > 1:6508314/1‑100 (MQ=255) aCAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAGTAGATTAGTTGAAc > 1:4823821/1‑100 (MQ=255) aCAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGTTTAgagcgga > 1:3855344/1‑94 (MQ=255) aCAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAAc > 1:4482247/1‑100 (MQ=255) aCAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAAc > 1:6389247/1‑100 (MQ=255) aCAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAAc > 1:122117/1‑100 (MQ=255) aCAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAAc > 1:1162681/1‑100 (MQ=255) aCAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGGGGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAAc > 1:1210266/1‑100 (MQ=255) gAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAACAAAACATGt > 1:5142919/1‑100 (MQ=255) gAGCAAATTTTAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAACAAAACATGt > 1:98491/1‑100 (MQ=255) tAGACACAATCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAACAAAACATGTCTAAGCCAGt > 1:1936187/1‑100 (MQ=255) gcctCCATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAACAAAACATGTCTAAGCCAGTAGCCGa > 1:1902451/4‑100 (MQ=255) acATTCAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGGAAAGTTTATAAATAGATTAGTTGAACAAAACATGTCTAAGCCAGTAGCTGAAATg > 1:6107891/2‑100 (MQ=255) tCAAGGCGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAACAAAACATGTCTAAGCCAGTAGCTGAAATGATTa > 1:4967019/1‑100 (MQ=255) cAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAACAAAACATGTCTAAGCCAGTAGCTGAAATGATTAg > 1:5200073/1‑100 (MQ=255) cAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAACAAAACATGTCTAAGCCAGTAGCTGAAATGATTAg > 1:6259297/1‑100 (MQ=255) cAAGGTGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTCGAACAAAACATGTCTAAGCCAGTAGCTGAAATGATTAg > 1:3188207/1‑100 (MQ=255) | TGAAATTTCTTGAAGAACCACCGGACAATACGATTGCTATTTTATTGTCTACAAAACCTGAGCAAATTTTAGACACAATCCATTCAAGATGTCAGCATGTATATTTCAAGCCTATTGATAAAGAAAAGTTTATAAATAGATTAGTTGAACAAAACATGTCTAAGCCAGTAGCTGAAATGATTAG > NC_007793/521662‑521845 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |