Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 2,742,108 C→T G41G (GGG→GGA)  SAUSA300_RS14090 ← 4‑aminobutyrate aminotransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077932,742,1080CT91.7% 26.9 / ‑5.8 12G41G (GGG→GGA) SAUSA300_RS140904‑aminobutyrate aminotransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (1/10);  minor base G (0/1);  total (1/11)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTGTGCCTTTATCGCTTCTGTTACTTCTCTAGGTGCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTCCCCTCAATATCAACCAATGTTGCTCCATATCCATGATCAATCACTAACGGATAATATTTAATACGTCCTGATTTCGC  >  NC_007793/2742021‑2742185
                                                                                       |                                                                             
ttGTGCCTTTATCGCTTCTGTTACTTCTCTAGGTGCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTTCCCTCAATATCa                                                                   <  1:1950731/100‑1 (MQ=255)
 tgtgCCTTTATCGCTTCTGTTACCTCTCTAGGTGCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTTCCCTCAATATCaa                                                                  <  1:4317868/100‑1 (MQ=255)
        ttATCGCTTCTGTTACTTCTCTAGGTGCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTGCCCTCAATATCAACCAATGt                                                           <  1:2502876/100‑1 (MQ=255)
         tATCGCTTCTGTTACTTCTCTAGGTGCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTTCCCTCAATATCAACCAATGtg                                                          <  1:4313776/100‑2 (MQ=255)
                tCTGTTACTTCTCTAGGTGCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTTCCCTCAATATCAACCAATGTTGCTCCat                                                   <  1:73597/100‑1 (MQ=255)
                    gtACTTCTCTAGGTGCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTTCCCTCAATATCAACCAATGTTGCTCCATATcc                                               <  1:6206816/99‑1 (MQ=255)
                          ctctAGGTGCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTTCCCTCAATATCAACCAATGTTGCTCCATATCCATGatc                                         <  1:3264221/100‑1 (MQ=255)
                            ctAGGTGCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTTCCCTCAATATCAACCAATGTTGCTCCATATCCATGatcaa                                       >  1:1971281/1‑100 (MQ=255)
                                  gCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTTCCCTCAATATCAACCAATGTTGCTCCATATCCATGATCAATCACTa                                 <  1:5269802/100‑1 (MQ=255)
                                                          gCACTCGATAACAAATCGATATATGTCTTTCCCTCAATATCAACCAATGTTGCTCCATATCCATGATCAATCACTAACGGATAATATTTAATACGTCCTg         <  1:3538206/100‑1 (MQ=255)
                                                            aCTCGATAACAAATCGATATATGTCTTTCCCTCAATATCAACCAATGTTGCTCCATATCCATGATCAATCACTAACGGATAATATTTAATACGTCCTGAt       <  1:2538102/100‑1 (MQ=255)
                                                                 aTAACAAATCGATATATGTCTTTCCCTCAATATCAACCAATGTTGCTCCATATCCATGATCAATCACTAACGGATAATATTTAATACGTCCTGATTTCGc  <  1:334926/100‑1 (MQ=255)
                                                                                       |                                                                             
TTGTGCCTTTATCGCTTCTGTTACTTCTCTAGGTGCATGACCTACGTTTTGAGAACTCGCACTCGATAACAAATCGATATATGTCTTCCCCTCAATATCAACCAATGTTGCTCCATATCCATGATCAATCACTAACGGATAATATTTAATACGTCCTGATTTCGC  >  NC_007793/2742021‑2742185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑