| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,652,084 | C→T | D267D (GAC→GAT) | SAUSA300_RS13615 → | fructose 1,6‑bisphosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,652,084 | 0 | C | T | 95.0% | 48.7 / NA | 20 | D267D (GAC→GAT) | SAUSA300_RS13615 | fructose 1,6‑bisphosphatase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (16/3); minor base A (1/0); total (17/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTGGGTTGGAGCCTATGCTGGGTCAAAAGTATGCTTAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGACGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGAAAAATACTATGACGCAGATAATCCTGCTTTTAAGCCTA > NC_007793/2651993‑2652163 | tttGGGTTGGAGCCTATGCTGGGTCAAAAGTATGCTTAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATga > 1:4433336/1‑99 (MQ=255)aatGGGTTGGAGCCTATGCTGGGTCAAAAGGATGCTTAGCAAACTTACTTCGATTTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTACgg > 1:704675/3‑100 (MQ=255) tGGGTTGGAGCCTATGCTGGGTCAAAAGTATGCTTAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCa > 1:5488001/1‑100 (MQ=255) gggTTGGAGCCTATGCTGGGTCAAAAGTATGCTTAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCAt > 1:4493477/1‑100 (MQ=255) aGCCTATGCTGGGTCAAAAGTATGCTTAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTa > 1:2602235/1‑100 (MQ=255) ccTATGCTGGGTCAAAAGTATGCTTAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAg > 1:1659671/1‑100 (MQ=255) aTGCTGGGTCAAAAGTATGCTTAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGAcc > 1:2498327/1‑100 (MQ=255) aTGCTGGGTCAAAAGTATGCTTAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGAcc > 1:4343996/1‑100 (MQ=255) cTGGGTCAAAAGTATGCTTAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCAcg < 1:6229690/100‑2 (MQ=255) tgttAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGa > 1:2088350/3‑100 (MQ=255) tAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGaaaa > 1:6143003/1‑100 (MQ=255) cccagttacttCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGAAAAATa > 1:5200354/6‑100 (MQ=255) acttacttCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGAAAAATACTa < 1:1999738/100‑1 (MQ=255) gtgCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCGCTGCTTACTTTAGCTGAAAAATACTATGACGCAGATAATcc > 1:5985600/1‑100 (MQ=255) gtgCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGAAAAATACTATGACGCAGAtcggaa > 1:4674417/1‑95 (MQ=255) gtgCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGAAAAATACTATGACGCAGATAATcc > 1:6367381/1‑100 (MQ=255) tgCACGTTATGATAATTTAGTTATTATCGAAGAAGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGAAAAATATTATGACGCAGATAATCCt > 1:2075101/1‑100 (MQ=255) gCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGAAAAATACTATGACGCATATAATCCTg > 1:6077787/1‑100 (MQ=255) gCACGTTATGATAATTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGAAAAATACTATGACACAGAtcggaaga > 1:6377248/1‑93 (MQ=255) aaTTTAGATATTATCGAAGATGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGAAAAATACTATGACGCAGATAATCCTGCTTTTAAGCCtg < 1:3026176/100‑2 (MQ=255) | TTTGGGTTGGAGCCTATGCTGGGTCAAAAGTATGCTTAGCAAACTTACTTCGAATTTGTGCACGTTATGATAATTTAGATATTATCGAAGACGCTTATGGCATTAATTTAAGACCACTGCTTACTTTAGCTGAAAAATACTATGACGCAGATAATCCTGCTTTTAAGCCTA > NC_007793/2651993‑2652163 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |