| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 2,601,699 | T→C | intergenic (‑29/+234) | SAUSA300_RS13370 ← / ← SAUSA300_RS13375 | hypothetical protein/short‑chain dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 2,601,699 | 0 | T | C | 100.0% | 24.8 / NA | 11 | intergenic (‑29/+234) | SAUSA300_RS13370/SAUSA300_RS13375 | hypothetical protein/short‑chain dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (1/10); total (1/10) | |||||||||||
CCAATTTTATCTGCAATCTCTCTTATAGCTTGATATAGCAATCTAAAACTTTCTTTTTCTTTTAACATAAAATTCTCCTTAATTTATTAGAATAGATAAAATACAGCTTATTTTAAAGATACTCCAAAAGTTTGAACTCGAGATTCTGATAAATTAGATGCACGACCTACAATACGTT > NC_007793/2601603‑2601780 | ccAATTTTATCTGCAATCTCTCTTATAGCTTGATATAGCAATCTAAAACTTTCTTTTTCTTTTAACATAAAATTCTCCTTAATTTATTAGAATAGACaaa > 1:6312222/1‑100 (MQ=255) ttttATCTGCAATCTCTCTTATAGCTTGATATAGCAATCTAAAACTTTCTTTTTCTTTTAACATAAAATTCTCCTTAATTTATTAGAATAGACAAAATAc < 1:1980795/100‑1 (MQ=255) tGCAATCTCTCTTATAGCTTGATATAGCAATCTAAAACTTTCTTTTTCTTTTAACATAAAATTCTCCTTAATTTATTAGAATAGACAAAATACAGCTTag < 1:1453850/100‑2 (MQ=255) tctctctcATAGCTTGATATAGCAATCTAAAACTTTCTTTTTCTTTTAACATAAAATTCTCCTTAATTTATTAGAATAGACAAAATACAGCTTATTTTaa < 1:3187609/100‑1 (MQ=255) aGCAATCTAAAACTTTCTTTTTCTTTTAACATAAAATTCTCCTTAATTTATTAGAATAGACAAAATACAGCTTATTTTAAAGATACTCCAAAAGTTTGat < 1:105460/100‑2 (MQ=255) aTCTAAAACTTTCTTTTTCTTTTAACATAAAATTCTCCTTAATTTATTAGAATAGACAAAATACAGCGTATTTTAAAGATACTCCAAAAGTTTGAACTCg < 1:1759819/100‑1 (MQ=255) ctttctttTTCTTTTAACATAAAATTCTCCTTAATTTATTAGAATAGACAAAATACAGCTTATTTTAAAGATACTCCAAAAGTTTGAACTCGAGATTCTg < 1:84605/100‑1 (MQ=255) aCATAAAATTCTCCTTAATTTATTAGAATAGACAAAATACAGCTTATTTTAAAGATACTCCAAAAGTTTGAACTCGAGATTCTGATAAATTAGATGCACg < 1:4679109/100‑1 (MQ=255) aaTTCTCCTTAATTTATTAGAATAGACAAAATACAGCTTATTTTAAAGATACTCCAAAAGTTTGAACTCGAGATTCTGATAAATTAGATGCACGACCTAc < 1:1414613/100‑1 (MQ=255) tctcCTTAATTTATTAGAATAGACAAAATACAGCTTATTTTAAAGATACTCCAAAAGTTTGAACTCGAGATTCTGATAAATTAGATGCACGACCTACAAt < 1:2976134/100‑1 (MQ=255) ttAATTTATTAGAATAGACAAAATACAGCTTATTTTAAAGATACTCCAAAAGTTTGAACTCGAGATTCTGATAAATTAGATGCACGACCTACAATACGtt < 1:2943926/100‑1 (MQ=255) | CCAATTTTATCTGCAATCTCTCTTATAGCTTGATATAGCAATCTAAAACTTTCTTTTTCTTTTAACATAAAATTCTCCTTAATTTATTAGAATAGATAAAATACAGCTTATTTTAAAGATACTCCAAAAGTTTGAACTCGAGATTCTGATAAATTAGATGCACGACCTACAATACGTT > NC_007793/2601603‑2601780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |